Test Report Ci Macos-Latest 3.11

Environnement

Python

3.11.9

Platform

macOS-15.7.4-arm64-arm-64bit

CI

true

System

Darwin

CPU

Apple M1 (Virtual) (Unknown frequency - 3 Cores (3 Logical))

RAM

7.00 GB

GPU

Error detecting GPU: NVML Shared Library Not Found

Summary

240 tests collected, 240 passed ✅, 0 failed ❌, 0 skipped ⏭️ in 0:01:25s on 03/04/2026 at 07:45:40

Monitoring

Test Cases

Palmtracer

Test Name

Status

Duration

Reset Result

✅

709ms

Getter Localization

✅

44ms

Getter Beads

✅

40ms

Getter Tracks

✅

56ms

Getter Tracks Compute

✅

54ms

Get Status

✅

66ms

Getter Path

✅

68ms

Getter Stack

✅

55ms

Getter Suffix

✅

55ms

Load Bad Dll

✅

59ms

Load Nothing

✅

65ms

Load

✅

204ms

Process No Input

✅

86ms

Process Nothing

✅

235ms

Process Bad Dll

✅

32ms

Process Multiple Stack

✅

59ms

Process Only Localization

✅

107ms

Process Only Localization Spline Bad

✅

52ms

Process Only Localization Spline

✅

96ms

Process Only Beads Extraction No Beads

✅

83ms

Process Plane Discontinuous

✅

42ms

Process Only Beads Extraction

✅

72ms

Process Only Tracking

✅

182ms

Process Only Tracking Blinking

✅

58ms

Process Only Tracks Compute

✅

98ms

Process Only Visualization Hr

✅

254ms

Process Only Visualization Graph

✅

4.49s

Process Only Gallery

✅

88ms

Process All

✅

5.03s

Reset Filtered

✅

57ms

Update Filtered

✅

87ms

Save Filtered

✅

63ms

Filter Plan

✅

95ms

Filter All Localization

✅

134ms

Filter All Tracking

✅

86ms

Filter All Tracks Compute

✅

140ms

Filter Outside

✅

40ms

Add Color

✅

57ms
Log Test : Update Filtered 
[03-04-2026 07:44:29] Log opened : /Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack_PALM_Tracer/log-20260403_074429.log
[03-04-2026 07:44:29] Start Processing.
[03-04-2026 07:44:29] Output folder: /Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack_PALM_Tracer
[03-04-2026 07:44:29] Settings saved.
[03-04-2026 07:44:29] Meta file saved.
[03-04-2026 07:44:29] Localization disabled.
[03-04-2026 07:44:29]        Loading a pre-computed localization file.
[03-04-2026 07:44:29]      File '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack_PALM_Tracer/localizations-20260403_074429.csv' loaded successfully, 451 localization(s) found.
[03-04-2026 07:44:29] Beads Extraction disabled.
[03-04-2026 07:44:29]     No pre-computed beads extraction data.
[03-04-2026 07:44:29] Tracking disabled.
[03-04-2026 07:44:29]     No pre-computed tracking data.
[03-04-2026 07:44:29] Blinking Reconnection disabled.
[03-04-2026 07:44:29] Tracks Computes disabled.
[03-04-2026 07:44:29]     No pre-computed tracks computes data.
[03-04-2026 07:44:29]  No pre-computed tracks computes data.
[03-04-2026 07:44:29]  No pre-computed tracks computes data.
[03-04-2026 07:44:29] High-resolution visualization disabled.
[03-04-2026 07:44:29] Graphical visualization disabled.
[03-04-2026 07:44:29] Gallery generation disabled.
[03-04-2026 07:44:29] Processing complete.
[03-04-2026 07:44:29] Log closed : /Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack_PALM_Tracer/log-20260403_074429.log

Processing Astigmatism3D

Test Name

Status

Duration

Get Z From Planes

✅

1ms

Get Z From Step

✅

1ms

Remove Multi Loc

✅

9ms

Sigma Model

✅

2ms

Model Validity

✅

3ms

Model Projection Validity

✅

15ms
Log Test : Remove Multi Loc 
Not all valid columns in localizations. Unable to remove ambiguous localizations reliably.
All planes contain multiple localizations. Unable to remove ambiguous localizations reliably.

Processing Drift

Test Name

Status

Duration

Extract Bead Bad Input

✅

4ms

Extract Beads No Match Returns Empty

✅

6ms

Assign Tracks No Pairs

✅

6ms

Assign Tracks Skip Used Track

✅

2ms

Extract Beads

✅

74ms

Remove Beads

✅

18ms

Get Drift Bad Input

✅

7ms

Get Drift

✅

27ms

Apply Drift Bad Input

✅

2ms

Apply Drift

✅

15ms

Chain Drift

✅

17ms

Drift Correction

✅

19ms

Processing Grapher

Test Name

Status

Duration

Blank

✅

220ms

Histogram

✅

593ms

Scatter

✅

399ms

Cloud

✅

666ms

Astigmatism3D Curve

✅

76ms

Processing Palm

Test Name

Status

Duration

Palm Dll Valid

✅

2ms

Palm Cpu Empty Result

✅

5ms

Palm Cpu Image

✅

725ms

Palm Cpu Stack

✅

4.22s

Palm Cpu Stack Plane Selection

✅

261ms

Palm Cpu Stack Dll Check Quadrant

✅

279ms

Cpu Auto Threshold

✅

34ms

Tracking

✅

5.91s

Blinking Reconnection

✅

243ms

Tracks Compute

✅

169ms

Align

✅

195ms

Wavelett

✅

59ms

Astigmatism 3D Calibration

✅

28ms

Astigmatism 3D Estimation

✅

8ms
Log Test : Palm Cpu Image 
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-0_103.6_True_0_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-0_103.6_True_1_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-0_103.6_True_2_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-0_103.6_True_3_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-0_103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Log Test : Palm Cpu Stack 
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_True_0_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_True_1_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_True_2_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_True_3_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_False_0_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_False_1_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_False_2_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_False_3_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_False_4_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Log Test : Palm Cpu Stack Plane Selection 
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-plane_select-103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 227 Points comparés, 227 Points identiques (100.00%)
Log Test : Palm Cpu Stack Dll Check Quadrant 
Comparaison terminée : 269 Points comparés, 269 Points identiques (100.00%)
Log Test : Tracking 
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-tracking-103.6_True_0_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 224 Points comparés, 224 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-tracking-103.6_True_1_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 223 Points comparés, 223 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-tracking-103.6_True_2_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 225 Points comparés, 225 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-tracking-103.6_True_3_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 222 Points comparés, 222 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-tracking-103.6_True_4_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 222 Points comparés, 222 Points identiques (100.00%)
Fichier de localisations '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_True_5_1.0_0.0_7.csv' indisponible.
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-tracking-103.6_False_0_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 214 Points comparés, 214 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-tracking-103.6_False_1_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 212 Points comparés, 212 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-tracking-103.6_False_2_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 217 Points comparés, 217 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-tracking-103.6_False_3_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 211 Points comparés, 211 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-tracking-103.6_False_4_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 214 Points comparés, 214 Points identiques (100.00%)
Fichier de localisations '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_False_5_1.0_0.0_7.csv' indisponible.
Log Test : Blinking Reconnection 
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/tracking-blinking-0.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/tracking-blinking-1.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/tracking-blinking-2.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)
Log Test : Tracks Compute 
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/tracking2-MSD-True.csv'
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/tracking2-Fit-True.csv'
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/tracking2-MSD-False.csv'
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/tracking2-Fit-False.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/tracking2-Fit-1.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/tracking2-Fit-2.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/tracking2-Fit-3.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering

Processing Parsing

Test Name

Status

Duration

Get Meta

✅

3ms

Rearrange Dataframe Columns

✅

4ms

Log10 Dataframe

✅

12ms

Parse Irregular Array

✅

3ms

Parse Result

✅

14ms

Parse Localization For Tracking

✅

7ms

Processing Renderer

Test Name

Status

Duration

Set Size

✅

1ms

Get Localization Colors

✅

15ms

Get Tracks Colors

✅

58ms

Draw Line

✅

3ms

Localizations

✅

1ms

Tracks

✅

1ms

Processing Visualization

Test Name

Status

Duration

Normalize Data

✅

1ms

Render Hr Image

✅

18ms

Render Hr Image Bad Input

✅

2ms

Render Tracks Image

✅

14ms

Render Tracks Image Bad Input

✅

5ms

Render Roi

✅

37ms

Render Roi Bad Input

✅

5ms

Plot Histogram

✅

1.15s

Plot Histogram Bad Input

✅

113ms

Plot Violin

✅

431ms

Plot Violin Bad Input

✅

48ms

Plot Heatmap

✅

359ms

Plot Heatmap Bad Input

✅

52ms

Settings Groups

Test Name

Status

Duration

Base Group

✅

3ms

Batch

✅

70ms

Batch Get Path

✅

3ms

Batch Get Stacks

✅

17ms

Calibration

✅

7ms

Localization

✅

14ms

Gaussian Fit

✅

6ms

Spline Fit

✅

10ms

Beads

✅

5ms

Tracking

✅

3ms

Tracks Blinking Reconnection

✅

5ms

Tracks Computes

✅

6ms

Gallery

✅

4ms

Visualization Hr

✅

10ms

Visualization Graph

✅

3ms

Filtering

✅

51ms

Filtering L

✅

19ms

Filtering T

✅

12ms
Log Test : Batch 
- Activate : True
- Files : -1
- Mode : 0

{'Files': -1, 'Mode': 0}
Log Test : Batch Get Stacks 
Error when concatenating stacks (they will be processed independently):
ValueError: all the input array dimensions except for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 128 and the array at index 1 has size 256
Log Test : Calibration 
- Activate : True
- Pixel Size : 0.32
- Exposure : 0.05
- Intensity : 0.012

{'Pixel Size': 0.32, 'Exposure': 0.05, 'Intensity': 0.012}
Log Test : Localization 
- Activate : True
- Preview : True
- Threshold : 90.0
- Auto Threshold : True
- ROI Shape : 0
- ROI Size : 7
- Watershed : True
- Fit : 0
- Gaussian Fit :
  - Activate : True
  - Mode : 0
  - Sigma : 1.0
  - Theta : 0.0
- Spline Fit :
  - Activate : True
  - Sensor : 0
  - Variance Map : 
  - File : 

{'Preview': True, 'Threshold': 90.0, 'Auto Threshold': True, 'ROI Shape': 0, 'ROI Size': 7, 'Watershed': True, 'Fit': 0, 'Gaussian Fit Mode': 0, 'Gaussian Fit Sigma': 1.0, 'Gaussian Fit Theta': 0.0, 'Spline Fit Sensor': 0, 'Spline Fit Variance Map': '', 'Spline Fit File': ''}
Log Test : Gaussian Fit 
- Activate : True
- Mode : 2
- Sigma : 1.0
- Theta : 0.0

{'Mode': 2, 'Sigma': 1.0, 'Theta': 0.0}
Log Test : Spline Fit 
- Activate : True
- Sensor : 1
- Variance Map : 
- File : 

{'Sensor': 1, 'Variance Map': '', 'File': ''}
Log Test : Beads 
- Activate : True
- Max Distance : 2.0
- 3D : False

{'Max Distance': 2.0, '3D': False}
Log Test : Tracking 
- Activate : True
- Max Distance : 2.0

{'Max Distance': 2.0}
Log Test : Tracks Blinking Reconnection 
- Activate : True
- Mode : 1
- Max Duration : 1
- Max Distance : 1.0

{'Mode': 1, 'Max Duration': 1, 'Max Distance': 1.0}
Log Test : Tracks Computes 
- Activate : True
- MSD : True
- Instant Diffusion : False
- Fit Length : 4
- 3D : False
- Log Scale : False
- Fit : 0

{'MSD': True, 'Instant Diffusion': False, 'Fit Length': 4, '3D': False, 'Log Scale': False, 'Fit': 0}
Log Test : Gallery 
- Activate : True
- ROI Size : 11
- ROIs Per Line : 30

{'ROI Size': 11, 'ROIs Per Line': 30}
Log Test : Visualization Hr 
- Activate : True
- Ratio : 1
- Type : 0
- Source L : 1
- Source T : 1

{'Ratio': 1, 'Type': 0, 'Source L': 1, 'Source T': 1}
Log Test : Visualization Graph 
- Activate : True
- Mode : 1
- Source : 0

{'Mode': 1, 'Source': 0}
Log Test : Filtering 
FilteringL id: 4789687568
X id: 5369963856
limits id 5230115456
- Activate : True
- Save : True
- Plane : [1, 100000]
- Localization :
  - Activate : True
  - X : [0, 100000]
  - Y : [0, 100000]
  - Z : [-1000, 1000]
  - Intensity : [0, 10000000]
  - Sigma X : [0.0, 10.0]
  - Sigma Y : [0.0, 10.0]
  - Circularity : [0.0, 1.0]
  - Theta : [-180.0, 180.0]
  - MSE XY : [0.0, 1.0]
  - MSE Z : [0.0, 1.0]
- Tracks :
  - Activate : True
  - Length : [1, 10000]
  - Instant D : [-5.0, 5.0]
  - D Coeff : [-5.0, 5.0]
  - Alpha : [-10.0, 10.0]
  - Speed : [0.0, 1.0]
  - Confinement : [-10.0, 10.0]

{'Save': True, 'Plane': [1, 100000], 'Localization X': [0, 100000], 'Localization Y': [0, 100000], 'Localization Z': [-1000, 1000], 'Localization Intensity': [0, 10000000], 'Localization Sigma X': [0.0, 10.0], 'Localization Sigma Y': [0.0, 10.0], 'Localization Circularity': [0.0, 1.0], 'Localization Theta': [-180.0, 180.0], 'Localization MSE XY': [0.0, 1.0], 'Localization MSE Z': [0.0, 1.0], 'Tracks Length': [1, 10000], 'Tracks Instant D': [-5.0, 5.0], 'Tracks D Coeff': [-5.0, 5.0], 'Tracks Alpha': [-10.0, 10.0], 'Tracks Speed': [0.0, 1.0], 'Tracks Confinement': [-10.0, 10.0]}
Log Test : Filtering L 
FilteringL id: 4792406992
X id: 4788255376
limits id 5227128384
- Activate : True
- X : [2, 9]
- Y : [0, 100000]
- Z : [-1000, 1000]
- Intensity : [0, 10000000]
- Sigma X : [0.0, 10.0]
- Sigma Y : [0.0, 10.0]
- Circularity : [0.0, 1.0]
- Theta : [-180.0, 180.0]
- MSE XY : [0.0, 1.0]
- MSE Z : [0.0, 1.0]

{'X': [2, 9], 'Y': [0, 100000], 'Z': [-1000, 1000], 'Intensity': [0, 10000000], 'Sigma X': [0.0, 10.0], 'Sigma Y': [0.0, 10.0], 'Circularity': [0.0, 1.0], 'Theta': [-180.0, 180.0], 'MSE XY': [0.0, 1.0], 'MSE Z': [0.0, 1.0]}
Log Test : Filtering T 
- Activate : True
- Length : [2, 3]
- Instant D : [-5.0, 5.0]
- D Coeff : [-5.0, 5.0]
- Alpha : [-10.0, 10.0]
- Speed : [0.0, 1.0]
- Confinement : [-10.0, 10.0]

{'Length': [2, 3], 'Instant D': [-5.0, 5.0], 'D Coeff': [-5.0, 5.0], 'Alpha': [-10.0, 10.0], 'Speed': [0.0, 1.0], 'Confinement': [-10.0, 10.0]}

Settings Settings

Test Name

Status

Duration

Settings

✅

78ms

Settings Group Getter

✅

41ms

Settings Signal

✅

65ms

Settings Signal

Test Name

Status

Duration

Connect And Emit Direct

✅

3ms

Disconnect

✅

1ms

Block Simple Coalescence Last Value

✅

1ms

Block Without Emits No Output

✅

1ms

Nested Blocks Emit Once At Outer Exit

✅

1ms

Emit Default None Coalesced

✅

2ms

Block Flags Reset After Flush

✅

2ms

Blocked Returns Context Manager Instance

✅

1ms

Internal Block Begin End Paths

✅

1ms

Coalescence Overwrite Multiple Times

✅

2ms

Emit Direct After Previous Block

✅

2ms

Settings Types

Test Name

Status

Duration

Base Setting

✅

5ms

Create Setting From Dict

✅

13ms

Create Setting From Dict Fail

✅

1ms

Spin Int

✅

40ms

Spin Float

✅

4ms

Check Box

✅

2ms

Combo

✅

3ms

Browse File

✅

9ms

File List

✅

6ms

Check Range Int

✅

8ms

Check Range Float

✅

5ms

Button

✅

5ms

Tools Fileio

Test Name

Status

Duration

Add Extension

✅

1ms

Add Suffix

✅

1ms

Get Timestamp For Files

✅

2ms

Get Last File

✅

3ms

Extract Suffix

✅

3ms

Load Dll

✅

7ms

Save Json

✅

2ms

Open Json

✅

4ms

Open Json Bad File

✅

2ms

Save Tif

✅

4ms

Save Tif 2D

✅

3ms

Save Tif Bad Stack

✅

1ms

Open Tif

✅

7ms

Open Tif Bad File

✅

2ms

Save Png

✅

5ms

Save Png Color

✅

9ms

Save Png Bad Sample

✅

1ms

Open Calibration Mat Bad File

✅

1ms

Open Calibration Mat

✅

9ms
Log Test : Get Timestamp For Files 
Timestamp with hour : 20260403_074447
Timestamp without hour : 20260403
Log Test : Get Last File 
/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/File-03.txt
/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/File-03.txt
Log Test : Load Dll 
Unable to load the DLL 'PALMTracer_File.dylib':
      dlopen(/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/DLL/PALMTracer_File.dylib, 0x0006): tried: '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/DLL/PALMTracer_File.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/DLL/PALMTracer_File.dylib' (no such file), '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/DLL/PALMTracer_File.dylib' (no such file)

Tools Filemigrator

Test Name

Status

Duration

Open

✅

5ms

Update Meta

✅

4ms

Open Old File

✅

10ms

Open Old Irregular File

✅

4ms

Column Migrator

✅

3ms

Analyze

✅

3ms

Migrate

✅

195ms
Log Test : Analyze 
.

Tools Logger

Test Name

Status

Duration

Logger

✅

4ms

Logger Bad Use

✅

2ms

Logger With Use

✅

5ms

Tools Monitoring

Test Name

Status

Duration

Monitoring

✅

1.42s

Monitoring Save

✅

6.87s
Log Test : Monitoring 
4 entrées.
Timestamps : [0.0, 0.41, 0.9, 1.06]
CPU Usage : [0.9666666666666667, 0.8333333333333334, 0.6333333333333333, 1.2333333333333334]
GPU Usage : [0, 0, 0, 0]
Memory Usage : [711.1875, 711.1875, 711.1875, 711.1875]
Disk Usage : [0, 0.0, 0.0, 0.0]
Log Test : Monitoring Save 
Simulating high CPU usage for 2 seconds...
CPU simulation complete.
Allocating 50 MB of memory...
Memory allocated. Holding for 2 seconds...
Releasing memory.
Writing a file of size 1 MB...
File written. Holding for 2 seconds...
Deleting the file...
Disk I/O simulation complete.
Kaleido doesn't work so well need update. No Image Saved.

Tools Ui

Test Name

Status

Duration

Builders

✅

6ms

Builders Spin

✅

4ms

Print Error

✅

1ms

Print Warning

✅

2ms

Print Success

✅

1ms

Format Time

✅

1ms
Log Test : Print Error 
Message d'erreur
Log Test : Print Warning 
Message d'avertissement
Log Test : Print Success 
Message de succes

Ui Alignmentwidget

Test Name

Status

Duration

Widget Creation

✅

30ms

Bad Load Tif

✅

13ms

Bad Load Coef

✅

17ms

Bad Compute

✅

9ms

Compute

✅

10ms

Bad Align

✅

8ms

Align

✅

62ms

Ui Astigmatism3Dwidget

Test Name

Status

Duration

Widget Creation

✅

1.51s

Bad Load Loc

✅

147ms

Bad Load Model

✅

238ms

Bad Compute

✅

107ms

Compute

✅

394ms

Compute Remove Multi

✅

302ms

Compute Z

✅

299ms

Compute Center Z

✅

395ms

Bad Estimate

✅

258ms

Estimate

✅

267ms

Estimate Backup

✅

264ms

Sync Spin

✅

147ms

Download

✅

208ms
Log Test : Download 
/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref

Ui Baseplotlywidget

Test Name

Status

Duration

Creation

✅

31ms

Update Plotly

✅

48ms

Update Plotly No Js

✅

59ms

Download Plotly

✅

62ms

Export Plotly

✅

50ms
Log Test : Download Plotly 
/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/output
/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/output
Log Test : Export Plotly 
No figures to export.

Ui Filemigratorwidget

Test Name

Status

Duration

Widget Creation

✅

7ms

Bad Load

✅

14ms

Mirgate

✅

32ms

Ui Graphviewer

Test Name

Status

Duration

Widget Creation

✅

251ms

Add Stack

✅

386ms

Actualize

✅

519ms

Reset Filtered

✅

369ms

Update Filtered

✅

468ms

Update Plot

✅

732ms

Dual Source

✅

423ms

Get Plot Data

✅

934ms

Tracks Source

✅

226ms
Log Test : Add Stack 
No valid settings file to load.

Ui Viewerhrwidget

Test Name

Status

Duration

Widget Creation

✅

1.97s

Add Stack

✅

1.17s

Change Source

✅

1.31s

Actualize

✅

1.22s

Reset Filtered

✅

1.40s

Update Filtered

✅

1.28s

Save

✅

1.23s

Generate

✅

1.28s

Generate Drift

✅

1.35s
Log Test : Save 
INFO: Image file saved successfully.

Ui Widget

Test Name

Status

Duration

Widget Creation

✅

1.27s

Widget On Load Setting

✅

1.25s

Widget Reset Setting

✅

1.28s

Widget Reset Layer

✅

2.25s

Widget Get Actual Image

✅

1.53s

Widget Add Detection Layers

✅

3.77s

Widget Preview

✅

1.78s

Widget Roi Filter Layer

✅

1.92s

Widget Auto Threshold

✅

1.41s

Widget Thread Process

✅

1.65s

Widget Keyblocker

✅

1.40s

Viewer3D

✅

1.59s
Log Test : Widget Get Actual Image 
INFO: Loaded /Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack.tif into Napari viewer.
Log Test : Widget Roi Filter Layer 
INFO: Loaded /Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack.tif into Napari viewer.
Log Test : Widget Thread Process 
INFO: Loaded /Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack.tif into Napari viewer.
INFO: Thread Process done.
[03-04-2026 07:45:35] Log opened : /Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack_PALM_Tracer/log-20260403_074535.log
[03-04-2026 07:45:35] Start Processing.
[03-04-2026 07:45:35] Output folder: /Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack_PALM_Tracer
[03-04-2026 07:45:35] Settings saved.
[03-04-2026 07:45:35] Meta file saved.
[03-04-2026 07:45:35] Localization disabled.
[03-04-2026 07:45:35]        No pre-computed localization data.
[03-04-2026 07:45:35] Beads Extraction disabled.
[03-04-2026 07:45:35]         No pre-computed beads extraction data.
[03-04-2026 07:45:35] Tracking disabled.
[03-04-2026 07:45:35]     No pre-computed tracking data.
[03-04-2026 07:45:35] Blinking Reconnection disabled.
[03-04-2026 07:45:35] Tracks Computes disabled.
[03-04-2026 07:45:35]     No pre-computed tracks computes data.
[03-04-2026 07:45:35]  No pre-computed tracks computes data.
[03-04-2026 07:45:35]  No pre-computed tracks computes data.
[03-04-2026 07:45:35] High-resolution visualization disabled.
[03-04-2026 07:45:35] Graphical visualization disabled.
[03-04-2026 07:45:35] Gallery generation disabled.
[03-04-2026 07:45:35] Processing complete.
[03-04-2026 07:45:35] Log closed : /Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack_PALM_Tracer/log-20260403_074535.log
INFO: Thread Process done.
Auto Threshold: 63.95
INFO: Thread Process done.
Log Test : Widget Keyblocker 
INFO: Loading the setting file '/Users/runner/.palm_tracer/settings.json'.
INFO: Loaded /Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack.tif into Napari viewer.
Log Test : Viewer3D 
WARNING: The file must contain the columns X, Y, Z, and Integrated Intensity.