Test Report Ci Windows-Latest 3.12

Environnement

Python	3.12.10
Platform	Windows-2025Server-10.0.26100-SP0
CI	true
System	Windows
CPU	AMD EPYC 7763 64-Core Processor (2.44 GHz - 2 Cores (4 Logical))
RAM	15.99 GB
GPU	Error detecting GPU: NVML Shared Library Not Found

Summary

240 tests collected, 240 passed ✅, 0 failed ❌, 0 skipped ⏭️ in 0:01:46s on 03/04/2026 at 07:46:41

Monitoring

Test Cases

Palmtracer

Test Name	Status	Duration
Reset Result	✅	64ms
Getter Localization	✅	47ms
Getter Beads	✅	48ms
Getter Tracks	✅	47ms
Getter Tracks Compute	✅	46ms
Get Status	✅	48ms
Getter Path	✅	50ms
Getter Stack	✅	45ms
Getter Suffix	✅	45ms
Load Bad Dll	✅	46ms
Load Nothing	✅	47ms
Load	✅	125ms
Process No Input	✅	46ms
Process Nothing	✅	208ms
Process Bad Dll	✅	49ms
Process Multiple Stack	✅	92ms
Process Only Localization	✅	89ms
Process Only Localization Spline Bad	✅	63ms
Process Only Localization Spline	✅	108ms
Process Only Beads Extraction No Beads	✅	93ms
Process Plane Discontinuous	✅	51ms
Process Only Beads Extraction	✅	91ms
Process Only Tracking	✅	324ms
Process Only Tracking Blinking	✅	87ms
Process Only Tracks Compute	✅	135ms
Process Only Visualization Hr	✅	264ms
Process Only Visualization Graph	✅	4.93s
Process Only Gallery	✅	99ms
Process All	✅	5.21s
Reset Filtered	✅	50ms
Update Filtered	✅	78ms
Save Filtered	✅	60ms
Filter Plan	✅	77ms
Filter All Localization	✅	123ms
Filter All Tracking	✅	105ms
Filter All Tracks Compute	✅	179ms
Filter Outside	✅	57ms
Add Color	✅	68ms

Log Test : Update Filtered

[03-04-2026 07:45:09] Log opened : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer/log-20260403_074509.log
[03-04-2026 07:45:09] Start Processing.
[03-04-2026 07:45:09] Output folder: D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer
[03-04-2026 07:45:09] Settings saved.
[03-04-2026 07:45:09] Meta file saved.
[03-04-2026 07:45:09] Localization disabled.
[03-04-2026 07:45:09]    Loading a pre-computed localization file.
[03-04-2026 07:45:09]      File 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer\localizations-20260403_074509.csv' loaded successfully, 451 localization(s) found.
[03-04-2026 07:45:09] Beads Extraction disabled.
[03-04-2026 07:45:09]   No pre-computed beads extraction data.
[03-04-2026 07:45:09] Tracking disabled.
[03-04-2026 07:45:09]     No pre-computed tracking data.
[03-04-2026 07:45:09] Blinking Reconnection disabled.
[03-04-2026 07:45:09] Tracks Computes disabled.
[03-04-2026 07:45:09]     No pre-computed tracks computes data.
[03-04-2026 07:45:09]  No pre-computed tracks computes data.
[03-04-2026 07:45:09]  No pre-computed tracks computes data.
[03-04-2026 07:45:09] High-resolution visualization disabled.
[03-04-2026 07:45:09] Graphical visualization disabled.
[03-04-2026 07:45:09] Gallery generation disabled.
[03-04-2026 07:45:09] Processing complete.
[03-04-2026 07:45:09] Log closed : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer/log-20260403_074509.log

Processing Astigmatism3D

Test Name	Status	Duration
Get Z From Planes	✅	1ms
Get Z From Step	✅	1ms
Remove Multi Loc	✅	11ms
Sigma Model	✅	1ms
Model Validity	✅	2ms
Model Projection Validity	✅	15ms

Log Test : Remove Multi Loc

Not all valid columns in localizations. Unable to remove ambiguous localizations reliably.
All planes contain multiple localizations. Unable to remove ambiguous localizations reliably.

Processing Drift

Test Name	Status	Duration
Extract Bead Bad Input	✅	6ms
Extract Beads No Match Returns Empty	✅	6ms
Assign Tracks No Pairs	✅	1ms
Assign Tracks Skip Used Track	✅	1ms
Extract Beads	✅	80ms
Remove Beads	✅	10ms
Get Drift Bad Input	✅	6ms
Get Drift	✅	27ms
Apply Drift Bad Input	✅	2ms
Apply Drift	✅	19ms
Chain Drift	✅	27ms
Drift Correction	✅	37ms

Processing Gallery

Test Name	Status	Duration
Make Gallery	✅	19ms

Processing Grapher

Test Name	Status	Duration
Blank	✅	366ms
Histogram	✅	693ms
Scatter	✅	422ms
Cloud	✅	1.47s
Astigmatism3D Curve	✅	82ms

Processing Palm

Test Name	Status	Duration
Palm Dll Valid	✅	1ms
Palm Cpu Empty Result	✅	5ms
Palm Cpu Image	✅	948ms
Palm Cpu Stack	✅	4.95s
Palm Cpu Stack Plane Selection	✅	279ms
Palm Cpu Stack Dll Check Quadrant	✅	362ms
Cpu Auto Threshold	✅	55ms
Tracking	✅	7.82s
Blinking Reconnection	✅	278ms
Tracks Compute	✅	69ms
Align	✅	198ms
Wavelett	✅	99ms
Astigmatism 3D Calibration	✅	11ms
Astigmatism 3D Estimation	✅	5ms

Log Test : Palm Cpu Image

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_0_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_1_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_2_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_3_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)

Log Test : Palm Cpu Stack

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_0_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_1_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_2_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_3_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_0_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_1_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_2_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_3_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_4_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)

Log Test : Palm Cpu Stack Plane Selection

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-plane_select-103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 227 Points comparés, 227 Points identiques (100.00%)

Log Test : Palm Cpu Stack Dll Check Quadrant

Comparaison terminée : 269 Points comparés, 269 Points identiques (100.00%)

Log Test : Tracking

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_0_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 224 Points comparés, 224 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_1_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 223 Points comparés, 223 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_2_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 225 Points comparés, 225 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_3_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 222 Points comparés, 222 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_4_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 222 Points comparés, 222 Points identiques (100.00%)
Fichier de localisations 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_5_1.0_0.0_7.csv' indisponible.
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_0_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 214 Points comparés, 214 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_1_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 212 Points comparés, 212 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_2_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 217 Points comparés, 217 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_3_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 211 Points comparés, 211 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_4_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 214 Points comparés, 214 Points identiques (100.00%)
Fichier de localisations 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_5_1.0_0.0_7.csv' indisponible.

Log Test : Blinking Reconnection

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking-blinking-0.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking-blinking-1.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking-blinking-2.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)

Log Test : Tracks Compute

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-MSD-True.csv'
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-True.csv'
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-MSD-False.csv'
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-False.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-1.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-2.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-3.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering

Processing Parsing

Test Name	Status	Duration
Get Meta	✅	6ms
Rearrange Dataframe Columns	✅	3ms
Log10 Dataframe	✅	4ms
Parse Irregular Array	✅	2ms
Parse Result	✅	21ms
Parse Localization For Tracking	✅	5ms

Processing Renderer

Test Name	Status	Duration
Set Size	✅	1ms
Get Localization Colors	✅	7ms
Get Tracks Colors	✅	34ms
Draw Line	✅	1ms
Localizations	✅	1ms
Tracks	✅	1ms

Processing Visualization

Test Name	Status	Duration
Normalize Data	✅	1ms
Render Hr Image	✅	21ms
Render Hr Image Bad Input	✅	2ms
Render Tracks Image	✅	20ms
Render Tracks Image Bad Input	✅	5ms
Render Roi	✅	49ms
Render Roi Bad Input	✅	5ms
Plot Histogram	✅	1.01s
Plot Histogram Bad Input	✅	463ms
Plot Violin	✅	771ms
Plot Violin Bad Input	✅	88ms
Plot Heatmap	✅	497ms
Plot Heatmap Bad Input	✅	87ms

Settings Groups

Test Name	Status	Duration
Base Group	✅	2ms
Batch	✅	77ms
Batch Get Path	✅	4ms
Batch Get Stacks	✅	22ms
Calibration	✅	9ms
Localization	✅	21ms
Gaussian Fit	✅	7ms
Spline Fit	✅	5ms
Beads	✅	5ms
Tracking	✅	5ms
Tracks Blinking Reconnection	✅	9ms
Tracks Computes	✅	7ms
Gallery	✅	5ms
Visualization Hr	✅	8ms
Visualization Graph	✅	5ms
Filtering	✅	60ms
Filtering L	✅	38ms
Filtering T	✅	24ms

Log Test : Batch

- Activate : True
- Files : -1
- Mode : 0

{'Files': -1, 'Mode': 0}

Log Test : Batch Get Stacks

Error when concatenating stacks (they will be processed independently):
ValueError: all the input array dimensions except for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 128 and the array at index 1 has size 256

Log Test : Calibration

- Activate : True
- Pixel Size : 0.32
- Exposure : 0.05
- Intensity : 0.012

{'Pixel Size': 0.32, 'Exposure': 0.05, 'Intensity': 0.012}

Log Test : Localization

- Activate : True
- Preview : True
- Threshold : 90.0
- Auto Threshold : True
- ROI Shape : 0
- ROI Size : 7
- Watershed : True
- Fit : 0
- Gaussian Fit :
  - Activate : True
  - Mode : 0
  - Sigma : 1.0
  - Theta : 0.0
- Spline Fit :
  - Activate : True
  - Sensor : 0
  - Variance Map : 
  - File : 

{'Preview': True, 'Threshold': 90.0, 'Auto Threshold': True, 'ROI Shape': 0, 'ROI Size': 7, 'Watershed': True, 'Fit': 0, 'Gaussian Fit Mode': 0, 'Gaussian Fit Sigma': 1.0, 'Gaussian Fit Theta': 0.0, 'Spline Fit Sensor': 0, 'Spline Fit Variance Map': '', 'Spline Fit File': ''}

Log Test : Gaussian Fit

- Activate : True
- Mode : 2
- Sigma : 1.0
- Theta : 0.0

{'Mode': 2, 'Sigma': 1.0, 'Theta': 0.0}

Log Test : Spline Fit

- Activate : True
- Sensor : 1
- Variance Map : 
- File : 

{'Sensor': 1, 'Variance Map': '', 'File': ''}

Log Test : Beads

- Activate : True
- Max Distance : 2.0
- 3D : False

{'Max Distance': 2.0, '3D': False}

Log Test : Tracking

- Activate : True
- Max Distance : 2.0

{'Max Distance': 2.0}

Log Test : Tracks Blinking Reconnection

- Activate : True
- Mode : 1
- Max Duration : 1
- Max Distance : 1.0

{'Mode': 1, 'Max Duration': 1, 'Max Distance': 1.0}

Log Test : Tracks Computes

- Activate : True
- MSD : True
- Instant Diffusion : False
- Fit Length : 4
- 3D : False
- Log Scale : False
- Fit : 0

{'MSD': True, 'Instant Diffusion': False, 'Fit Length': 4, '3D': False, 'Log Scale': False, 'Fit': 0}

Log Test : Gallery

- Activate : True
- ROI Size : 11
- ROIs Per Line : 30

{'ROI Size': 11, 'ROIs Per Line': 30}

Log Test : Visualization Hr

- Activate : True
- Ratio : 1
- Type : 0
- Source L : 1
- Source T : 1

{'Ratio': 1, 'Type': 0, 'Source L': 1, 'Source T': 1}

Log Test : Visualization Graph

- Activate : True
- Mode : 1
- Source : 0

{'Mode': 1, 'Source': 0}

Log Test : Filtering

FilteringL id: 2946120873216
X id: 2946120859728
limits id 2946131618432
- Activate : True
- Save : True
- Plane : [1, 100000]
- Localization :
  - Activate : True
  - X : [0, 100000]
  - Y : [0, 100000]
  - Z : [-1000, 1000]
  - Intensity : [0, 10000000]
  - Sigma X : [0.0, 10.0]
  - Sigma Y : [0.0, 10.0]
  - Circularity : [0.0, 1.0]
  - Theta : [-180.0, 180.0]
  - MSE XY : [0.0, 1.0]
  - MSE Z : [0.0, 1.0]
- Tracks :
  - Activate : True
  - Length : [1, 10000]
  - Instant D : [-5.0, 5.0]
  - D Coeff : [-5.0, 5.0]
  - Alpha : [-10.0, 10.0]
  - Speed : [0.0, 1.0]
  - Confinement : [-10.0, 10.0]

{'Save': True, 'Plane': [1, 100000], 'Localization X': [0, 100000], 'Localization Y': [0, 100000], 'Localization Z': [-1000, 1000], 'Localization Intensity': [0, 10000000], 'Localization Sigma X': [0.0, 10.0], 'Localization Sigma Y': [0.0, 10.0], 'Localization Circularity': [0.0, 1.0], 'Localization Theta': [-180.0, 180.0], 'Localization MSE XY': [0.0, 1.0], 'Localization MSE Z': [0.0, 1.0], 'Tracks Length': [1, 10000], 'Tracks Instant D': [-5.0, 5.0], 'Tracks D Coeff': [-5.0, 5.0], 'Tracks Alpha': [-10.0, 10.0], 'Tracks Speed': [0.0, 1.0], 'Tracks Confinement': [-10.0, 10.0]}

Log Test : Filtering L

FilteringL id: 2946121604640
X id: 2946120874224
limits id 2946121884992
- Activate : True
- X : [2, 9]
- Y : [0, 100000]
- Z : [-1000, 1000]
- Intensity : [0, 10000000]
- Sigma X : [0.0, 10.0]
- Sigma Y : [0.0, 10.0]
- Circularity : [0.0, 1.0]
- Theta : [-180.0, 180.0]
- MSE XY : [0.0, 1.0]
- MSE Z : [0.0, 1.0]

{'X': [2, 9], 'Y': [0, 100000], 'Z': [-1000, 1000], 'Intensity': [0, 10000000], 'Sigma X': [0.0, 10.0], 'Sigma Y': [0.0, 10.0], 'Circularity': [0.0, 1.0], 'Theta': [-180.0, 180.0], 'MSE XY': [0.0, 1.0], 'MSE Z': [0.0, 1.0]}

Log Test : Filtering T

- Activate : True
- Length : [2, 3]
- Instant D : [-5.0, 5.0]
- D Coeff : [-5.0, 5.0]
- Alpha : [-10.0, 10.0]
- Speed : [0.0, 1.0]
- Confinement : [-10.0, 10.0]

{'Length': [2, 3], 'Instant D': [-5.0, 5.0], 'D Coeff': [-5.0, 5.0], 'Alpha': [-10.0, 10.0], 'Speed': [0.0, 1.0], 'Confinement': [-10.0, 10.0]}

Settings Settings

Test Name	Status	Duration
Settings	✅	108ms
Settings Group Getter	✅	50ms
Settings Signal	✅	64ms

Settings Signal

Test Name	Status	Duration
Connect And Emit Direct	✅	2ms
Disconnect	✅	2ms
Block Simple Coalescence Last Value	✅	2ms
Block Without Emits No Output	✅	1ms
Nested Blocks Emit Once At Outer Exit	✅	1ms
Emit Default None Coalesced	✅	1ms
Block Flags Reset After Flush	✅	1ms
Blocked Returns Context Manager Instance	✅	2ms
Internal Block Begin End Paths	✅	1ms
Coalescence Overwrite Multiple Times	✅	1ms
Emit Direct After Previous Block	✅	1ms

Settings Types

Test Name	Status	Duration
Base Setting	✅	2ms
Create Setting From Dict	✅	6ms
Create Setting From Dict Fail	✅	1ms
Spin Int	✅	4ms
Spin Float	✅	3ms
Check Box	✅	3ms
Combo	✅	3ms
Browse File	✅	3ms
File List	✅	4ms
Check Range Int	✅	5ms
Check Range Float	✅	8ms
Button	✅	4ms

Tools Fileio

Test Name	Status	Duration
Add Extension	✅	1ms
Add Suffix	✅	1ms
Get Timestamp For Files	✅	1ms
Get Last File	✅	2ms
Extract Suffix	✅	1ms
Load Dll	✅	2ms
Save Json	✅	2ms
Open Json	✅	1ms
Open Json Bad File	✅	1ms
Save Tif	✅	14ms
Save Tif 2D	✅	14ms
Save Tif Bad Stack	✅	1ms
Open Tif	✅	13ms
Open Tif Bad File	✅	1ms
Save Png	✅	7ms
Save Png Color	✅	12ms
Save Png Bad Sample	✅	1ms
Open Calibration Mat Bad File	✅	1ms
Open Calibration Mat	✅	4ms

Log Test : Get Timestamp For Files

Timestamp with hour : 20260403_074532
Timestamp without hour : 20260403

Log Test : Get Last File

D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\File-03.txt
D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\File-03.txt

Log Test : Load Dll

Unable to load the DLL 'PALMTracer_File.dll':
        Could not find module 'D:\a\palm-tracer\palm-tracer\palm_tracer\DLL\PALMTracer_File.dll' (or one of its dependencies). Try using the full path with constructor syntax.

Tools Filemigrator

Test Name	Status	Duration
Open	✅	4ms
Update Meta	✅	5ms
Open Old File	✅	5ms
Open Old Irregular File	✅	4ms
Column Migrator	✅	4ms
Analyze	✅	4ms
Migrate	✅	355ms

Log Test : Analyze

.

Tools Logger

Test Name	Status	Duration
Logger	✅	18ms
Logger Bad Use	✅	6ms
Logger With Use	✅	4ms

Tools Monitoring

Test Name	Status	Duration
Monitoring	✅	1.21s
Monitoring Save	✅	6.71s

Log Test : Monitoring

6 entrées.
Timestamps : [0.0, 0.2, 0.41, 0.61, 0.81, 1.0]
CPU Usage : [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
GPU Usage : [0, 0, 0, 0, 0, 0]
Memory Usage : [529.98828125, 529.98828125, 529.98828125, 529.98828125, 529.98828125, 529.96484375]
Disk Usage : [0, 0.0, 0.0, 0.0, 0.0, 0.0]

Log Test : Monitoring Save

Simulating high CPU usage for 2 seconds...
CPU simulation complete.
Allocating 50 MB of memory...
Memory allocated. Holding for 2 seconds...
Releasing memory.
Writing a file of size 1 MB...
File written. Holding for 2 seconds...
Deleting the file...
Disk I/O simulation complete.
Kaleido doesn't work so well need update. No Image Saved.

Tools Ui

Test Name	Status	Duration
Builders	✅	4ms
Builders Spin	✅	2ms
Print Error	✅	1ms
Print Warning	✅	2ms
Print Success	✅	1ms
Format Time	✅	1ms

Log Test : Print Error

Message d'erreur

Log Test : Print Warning

Message d'avertissement

Log Test : Print Success

Message de succes

Ui Alignmentwidget

Test Name	Status	Duration
Widget Creation	✅	6ms
Bad Load Tif	✅	9ms
Bad Load Coef	✅	35ms
Bad Compute	✅	7ms
Compute	✅	8ms
Bad Align	✅	9ms
Align	✅	104ms

Ui Astigmatism3Dwidget

Test Name	Status	Duration
Widget Creation	✅	1.73s
Bad Load Loc	✅	213ms
Bad Load Model	✅	199ms
Bad Compute	✅	178ms
Compute	✅	489ms
Compute Remove Multi	✅	486ms
Compute Z	✅	446ms
Compute Center Z	✅	517ms
Bad Estimate	✅	405ms
Estimate	✅	398ms
Estimate Backup	✅	369ms
Sync Spin	✅	280ms
Download	✅	302ms

Log Test : Download

D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref

Ui Baseplotlywidget

Test Name	Status	Duration
Creation	✅	97ms
Update Plotly	✅	108ms
Update Plotly No Js	✅	85ms
Download Plotly	✅	104ms
Export Plotly	✅	97ms

Log Test : Download Plotly

D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\output
D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\output

Log Test : Export Plotly

No figures to export.

Ui Filemigratorwidget

Test Name	Status	Duration
Widget Creation	✅	14ms
Bad Load	✅	10ms
Mirgate	✅	49ms

Ui Graphviewer

Test Name	Status	Duration
Widget Creation	✅	362ms
Add Stack	✅	588ms
Actualize	✅	667ms
Reset Filtered	✅	456ms
Update Filtered	✅	548ms
Update Plot	✅	1.03s
Dual Source	✅	569ms
Get Plot Data	✅	1.16s
Tracks Source	✅	339ms

Log Test : Add Stack

No valid settings file to load.

Ui Viewerhrwidget

Test Name	Status	Duration
Widget Creation	✅	2.08s
Add Stack	✅	1.59s
Change Source	✅	1.73s
Actualize	✅	1.68s
Reset Filtered	✅	1.62s
Update Filtered	✅	1.64s
Save	✅	1.67s
Generate	✅	1.74s
Generate Drift	✅	1.72s

Log Test : Save

INFO: Image file saved successfully.

Ui Widget

Test Name	Status	Duration
Widget Creation	✅	1.58s
Widget On Load Setting	✅	1.59s
Widget Reset Setting	✅	1.56s
Widget Reset Layer	✅	2.10s
Widget Get Actual Image	✅	1.70s
Widget Add Detection Layers	✅	4.97s
Widget Preview	✅	2.45s
Widget Roi Filter Layer	✅	2.21s
Widget Auto Threshold	✅	1.85s
Widget Thread Process	✅	1.88s
Widget Keyblocker	✅	1.92s
Viewer3D	✅	1.91s

Log Test : Widget Get Actual Image

INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.

Log Test : Widget Roi Filter Layer

INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.

Log Test : Widget Thread Process

INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.
INFO: Thread Process done.
[03-04-2026 07:46:30] Log opened : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer/log-20260403_074630.log
[03-04-2026 07:46:30] Start Processing.
[03-04-2026 07:46:30] Output folder: D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer
[03-04-2026 07:46:30] Settings saved.
[03-04-2026 07:46:30] Meta file saved.
[03-04-2026 07:46:30] Localization disabled.
[03-04-2026 07:46:30]  No pre-computed localization data.
[03-04-2026 07:46:30] Beads Extraction disabled.
[03-04-2026 07:46:30]         No pre-computed beads extraction data.
[03-04-2026 07:46:30] Tracking disabled.
[03-04-2026 07:46:30]     No pre-computed tracking data.
[03-04-2026 07:46:30] Blinking Reconnection disabled.
[03-04-2026 07:46:30] Tracks Computes disabled.
[03-04-2026 07:46:30]     No pre-computed tracks computes data.
[03-04-2026 07:46:30]  No pre-computed tracks computes data.
[03-04-2026 07:46:30]  No pre-computed tracks computes data.
[03-04-2026 07:46:30] High-resolution visualization disabled.
[03-04-2026 07:46:30] Graphical visualization disabled.
[03-04-2026 07:46:30] Gallery generation disabled.
[03-04-2026 07:46:30] Processing complete.
[03-04-2026 07:46:30] Log closed : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer/log-20260403_074630.log
INFO: Thread Process done.
Auto Threshold: 63.95
INFO: Thread Process done.

Log Test : Widget Keyblocker

INFO: Loading the setting file 'C:\Users\runneradmin\.palm_tracer\settings.json'.
INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.

Log Test : Viewer3D

WARNING: The file must contain the columns X, Y, Z, and Integrated Intensity.