Test Report Ci Windows-Latest 3.11

Environnement

Python	3.11.9
Platform	Windows-10-10.0.26100-SP0
CI	true
System	Windows
CPU	AMD EPYC 9V74 80-Core Processor (2.60 GHz - 2 Cores (4 Logical))
RAM	15.99 GB
GPU	Error detecting GPU: NVML Shared Library Not Found

Summary

263 tests collected, 263 passed ✅, 0 failed ❌, 0 skipped ⏭️ in 0:01:31s on 04/05/2026 at 14:29:27

Monitoring

Test Cases

Palmtracer

Test Name	Status	Duration
Reset Result	✅	52ms
Getter Localization	✅	40ms
Getter Beads	✅	36ms
Getter Tracks	✅	48ms
Getter Tracks Compute	✅	36ms
Get Status	✅	40ms
Getter Path	✅	42ms
Getter Stack	✅	37ms
Getter Suffix	✅	57ms
Load Bad Dll	✅	37ms
Load Nothing	✅	37ms
Load	✅	94ms
Process No Input	✅	39ms
Process Nothing	✅	179ms
Process Bad Dll	✅	37ms
Process Multiple Stack	✅	73ms
Process Localization	✅	72ms
Process Localization Z	✅	159ms
Process Localization Spline Bad	✅	73ms
Process Localization Spline	✅	83ms
Process Beads Extraction No Beads	✅	82ms
Process Plane Discontinuous	✅	42ms
Process Beads Extraction	✅	136ms
Process Tracking	✅	270ms
Process Tracking Blinking	✅	119ms
Process Tracks Compute	✅	2.27s
Process Gallery	✅	112ms
Process Visualization Graph	✅	4.06s
Process Visualization Hr	✅	1.31s
Process All	✅	4.28s
Reset Filtered	✅	41ms
Update Filtered	✅	113ms
Save Filtered	✅	66ms
Filter Localization	✅	1.18s
Filter Tracks Compute	✅	2.29s
Add Color	✅	56ms
Get Astigmatism Model	✅	49ms

Log Test : Update Filtered

[04-05-2026 14:28:11] Log opened : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer\log-20260504_142811.log
[04-05-2026 14:28:11] Start Processing.
[04-05-2026 14:28:11] Output folder: D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer
[04-05-2026 14:28:11] Meta file saved.
[04-05-2026 14:28:11] Settings saved.
[04-05-2026 14:28:11] Localization load previous result (Timestamp : 20260101_000000).
[04-05-2026 14:28:11]  File 'localizations-20260101_000000.csv' loaded successfully, 451 row(s) found.
[04-05-2026 14:28:11] Beads Extraction disabled.
[04-05-2026 14:28:11] Tracking disabled.
[04-05-2026 14:28:11] Blinking Reconnection disabled.
[04-05-2026 14:28:11] Tracks Compute disabled.
[04-05-2026 14:28:11] Gallery generation disabled.
[04-05-2026 14:28:11] Graphical visualization disabled.
[04-05-2026 14:28:11] High-resolution visualization disabled.
[04-05-2026 14:28:11] Processing complete.
[04-05-2026 14:28:11] Log closed : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer\log-20260504_142811.log

Processing Astigmatism3D

Test Name	Status	Duration
Get Z From Planes	✅	1ms
Get Z From Step	✅	1ms
Remove Multi Loc	✅	11ms
Sigma Model	✅	1ms
Model Validity	✅	2ms
Model Projection Validity	✅	14ms
Find Model Center	✅	2ms

Log Test : Remove Multi Loc

Not all valid columns in localizations. Unable to remove ambiguous localizations reliably.
All planes contain multiple localizations. Unable to remove ambiguous localizations reliably.

Log Test : Model Projection Validity

{'rmse_z': 5.777646505663858, 'mae_z': 4.527265453090619, 'p95_abs_z': 11.402280456091262, 'bias_z': 0.034926985397079696, 'std_z': 5.777540934524036, 'mean_dist': 0.015979049334594875, 'p95_dist': 0.03907161488826703, 'slope_mean': 0.003993454737472619}
{'rmse_z': 577.3147040352493, 'mae_z': 499.9443888777755, 'p95_abs_z': 950.0000000000001, 'bias_z': 7.395319063812727, 'std_z': 577.2673356004581, 'mean_dist': 0.02749131099862401, 'p95_dist': 0.09899871427527444, 'slope_mean': 0.003993454737472619}
{'rmse_z': 763.5196346175319, 'mae_z': 749.5955591118224, 'p95_abs_z': 975.0050010002001, 'bias_z': 20.59999999999995, 'std_z': 763.2416867850505, 'mean_dist': 1.592075248599287, 'p95_dist': 2.2654090960555444, 'slope_mean': 0.00156321987547227}

Processing Drift

Test Name	Status	Duration
Extract Bead Bad Input	✅	5ms
Extract Beads No Match Returns Empty	✅	4ms
Assign Tracks No Pairs	✅	1ms
Assign Tracks Skip Used Track	✅	1ms
Extract Beads	✅	70ms
Remove Beads	✅	9ms
Get Drift Bad Input	✅	5ms
Get Drift	✅	22ms
Apply Drift Bad Input	✅	2ms
Remove Drift	✅	19ms
Chain Drift	✅	20ms
Drift Correction	✅	29ms
Median Filter Centered	✅	4ms

Processing Filtering

Test Name	Status	Duration
Filter Bad	✅	25ms
Localization	✅	50ms
Tracking	✅	25ms
Tracks Compute	✅	41ms

Processing Gallery

Test Name	Status	Duration
Make Gallery	✅	8ms

Processing Grapher

Test Name	Status	Duration
Blank	✅	208ms
Histogram	✅	527ms
Scatter	✅	326ms
Cloud	✅	1.10s
Astigmatism3D	✅	326ms

Processing Palm

Test Name	Status	Duration
Palm Dll Valid	✅	1ms
Palm Cpu Empty Result	✅	4ms
Palm Cpu Image	✅	720ms
Palm Cpu Stack	✅	3.41s
Palm Cpu Stack Plane Selection	✅	194ms
Palm Cpu Stack Dll Check Quadrant	✅	261ms
Cpu Auto Threshold	✅	42ms
Tracking	✅	5.67s
Blinking Reconnection	✅	184ms
Tracks Compute	✅	46ms
Align	✅	141ms
Wavelett	✅	48ms
Astigmatism 3D Calibration	✅	9ms
Astigmatism 3D Estimation	✅	5ms

Log Test : Palm Cpu Image

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_0_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_1_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_2_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_3_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Theta mean: 4.11°, Theta median (robust) : 0.52°, Concentration R: 0.923
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Theta mean: -5.05°, Theta median (robust) : -1.63°, Concentration R: 0.892
Theta mean: -7.82°, Theta median (robust) : -0.76°, Concentration R: 0.858
Theta mean: 3.99°, Theta median (robust) : -0.59°, Concentration R: 0.900
Theta mean: 1.57°, Theta median (robust) : -0.23°, Concentration R: 0.851
Theta mean: -0.87°, Theta median (robust) : 0.07°, Concentration R: 0.848
Theta mean: -1.38°, Theta median (robust) : 0.78°, Concentration R: 0.933
Theta mean: 3.27°, Theta median (robust) : 0.13°, Concentration R: 0.813
Theta mean: 1.46°, Theta median (robust) : 0.43°, Concentration R: 0.917
Theta mean: 0.58°, Theta median (robust) : 0.03°, Concentration R: 0.896

Log Test : Palm Cpu Stack

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_0_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_1_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_2_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_3_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Theta mean: 0.04°, Theta median (robust) : 0.07°, Concentration R: 0.884
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_0_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_1_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_2_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_3_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Theta mean: -0.33°, Theta median (robust) : -0.04°, Concentration R: 0.887
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_4_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)

Log Test : Palm Cpu Stack Plane Selection

Theta mean: -0.53°, Theta median (robust) : -0.05°, Concentration R: 0.876
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-plane_select-103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 227 Points comparés, 227 Points identiques (100.00%)

Log Test : Palm Cpu Stack Dll Check Quadrant

Theta mean: -1.19°, Theta median (robust) : -0.02°, Concentration R: 0.868
Comparaison terminée : 269 Points comparés, 269 Points identiques (100.00%)

Log Test : Tracking

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_0_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 224 Points comparés, 224 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_1_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 223 Points comparés, 223 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_2_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 225 Points comparés, 225 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_3_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 222 Points comparés, 222 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_4_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 222 Points comparés, 222 Points identiques (100.00%)
Fichier de localisations 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_5_1.0_0.0_7.csv' indisponible.
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_0_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 214 Points comparés, 214 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_1_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 212 Points comparés, 212 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_2_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 217 Points comparés, 217 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_3_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 211 Points comparés, 211 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_4_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 214 Points comparés, 214 Points identiques (100.00%)
Fichier de localisations 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_5_1.0_0.0_7.csv' indisponible.

Log Test : Blinking Reconnection

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking-blinking-0.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking-blinking-1.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking-blinking-2.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)

Log Test : Tracks Compute

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-MSD-True.csv'
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-True.csv'
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-MSD-False.csv'
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-False.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-1.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-2.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-3.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering

Processing Parsing

Test Name	Status	Duration
Get Meta	✅	2ms
Rearrange Dataframe Columns	✅	2ms
Log10 Dataframe	✅	3ms
Degrees To Radians	✅	1ms
Radians To Degrees	✅	1ms
Wrap Angle	✅	1ms
Manage Theta	✅	1ms
Parse Irregular Array	✅	1ms
Parse Result	✅	15ms
Parse Localization For Tracking	✅	4ms

Log Test : Manage Theta

Theta mean: -16.32°, Theta median (robust) : 0.00°, Concentration R: 0.712

Processing Renderer

Test Name	Status	Duration
Set Size	✅	1ms
Get Localization Colors	✅	4ms
Get Tracks Colors	✅	28ms
Draw Line	✅	1ms
Draw Gaussian	✅	1ms
Localizations	✅	1ms
Localizations Gaussian	✅	2ms
Tracks	✅	1ms

Processing Step

Test Name	Status	Duration
Object Creation	✅	1ms
Prepare Action	✅	14ms

Log Test : Object Creation

Step : Step(group_name='name', keys=['key'], process_func=<function test_object_creation.<locals>.f at 0x000001A0DA0BFA60>, filter_func=<function test_object_creation.<locals>.f at 0x000001A0DA0BFA60>, allow_dirty=False, apply_filter=True)
Actions : StepAction.Compute,StepAction.Reuse,StepAction.Skip

Processing Visualization

Test Name	Status	Duration
Normalize Data	✅	1ms
Render Hr Image	✅	18ms
Render Hr Image Bad Input	✅	2ms
Render Tracks Image	✅	22ms
Render Tracks Image Bad Input	✅	4ms
Render Roi	✅	41ms
Render Roi Bad Input	✅	2ms
Plot Histogram	✅	902ms
Plot Histogram Bad Input	✅	131ms
Plot Violin	✅	770ms
Plot Violin Bad Input	✅	66ms
Plot Heatmap	✅	374ms
Plot Heatmap Bad Input	✅	66ms

Settings Groups

Test Name	Status	Duration
Base Group	✅	2ms
Batch	✅	143ms
Batch Get Path	✅	3ms
Batch Get Stacks	✅	13ms
Calibration	✅	5ms
Localization	✅	18ms
Gaussian Fit	✅	8ms
Spline Fit	✅	4ms
Beads	✅	3ms
Tracking	✅	3ms
Tracks Blinking Reconnection	✅	5ms
Tracks Computes	✅	5ms
Gallery	✅	4ms
Visualization Hr	✅	6ms
Visualization Graph	✅	3ms
Filters	✅	40ms
Filters L	✅	26ms
Filters T	✅	14ms

Log Test : Batch

- Activate : True
- Files : -1
- Mode : 0

{'Files': -1, 'Mode': 0}

Log Test : Batch Get Stacks

Error when concatenating stacks (they will be processed independently):
ValueError: all the input array dimensions except for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 128 and the array at index 1 has size 256

Log Test : Calibration

- Activate : True
- Pixel Size : 0.32
- Exposure : 0.05
- Intensity : 0.012

{'Pixel Size': 0.32, 'Exposure': 0.05, 'Intensity': 0.012}

Log Test : Localization

- Activate : True
- Preview : True
- Threshold : 90.0
- Auto Threshold : True
- ROI Shape : 0
- ROI Size : 7
- Watershed : True
- Fit : 0
- Gaussian Fit :
  - Activate : True
  - Mode : 0
  - Sigma : 1.0
  - Theta : 0.0
  - Z : False
  - Z max : 500
  - Model : 
- Spline Fit :
  - Activate : True
  - Sensor : 0
  - Variance Map : 
  - File : 

{'Preview': True, 'Threshold': 90.0, 'Auto Threshold': True, 'ROI Shape': 0, 'ROI Size': 7, 'Watershed': True, 'Fit': 0, 'Gaussian Fit Mode': 0, 'Gaussian Fit Sigma': 1.0, 'Gaussian Fit Theta': 0.0, 'Gaussian Fit Z': False, 'Gaussian Fit Z max': 500, 'Gaussian Fit Model': '', 'Spline Fit Sensor': 0, 'Spline Fit Variance Map': '', 'Spline Fit File': ''}

Log Test : Gaussian Fit

- Activate : True
- Mode : 2
- Sigma : 1.0
- Theta : 0.0
- Z : False
- Z max : 500
- Model : 

{'Mode': 2, 'Sigma': 1.0, 'Theta': 0.0, 'Z': False, 'Z max': 500, 'Model': ''}

Log Test : Spline Fit

- Activate : True
- Sensor : 1
- Variance Map : 
- File : 

{'Sensor': 1, 'Variance Map': '', 'File': ''}

Log Test : Beads

- Activate : True
- Max Distance : 2.0
- 3D : False

{'Max Distance': 2.0, '3D': False}

Log Test : Tracking

- Activate : True
- Max Distance : 2.0

{'Max Distance': 2.0}

Log Test : Tracks Blinking Reconnection

- Activate : True
- Mode : 1
- Max Duration : 1
- Max Distance : 1.0

{'Mode': 1, 'Max Duration': 1, 'Max Distance': 1.0}

Log Test : Tracks Computes

- Activate : True
- MSD : True
- Instant Diffusion : False
- Fit Length : 4
- 3D : False
- Log Scale : False
- Fit : 0

{'MSD': True, 'Instant Diffusion': False, 'Fit Length': 4, '3D': False, 'Log Scale': False, 'Fit': 0}

Log Test : Gallery

- Activate : True
- ROI Size : 11
- ROIs Per Line : 30

{'ROI Size': 11, 'ROIs Per Line': 30}

Log Test : Visualization Hr

- Activate : True
- Ratio : 1
- Type : 0
- Source L : 1
- Source T : 1

{'Ratio': 1, 'Type': 0, 'Source L': 1, 'Source T': 1}

Log Test : Visualization Graph

- Activate : True
- Mode : 1
- Source : 0

{'Mode': 1, 'Source': 0}

Log Test : Filters

- Activate : True
- Save : True
- Plane : [1, 100000]
- Localization :
  - Activate : True
  - X : [0, 100000]
  - Y : [0, 100000]
  - Z : [-2000, 2000]
  - Intensity : [0, 10000000]
  - Sigma X : [0.0, 10.0]
  - Sigma Y : [0.0, 10.0]
  - Circularity : [0.0, 1.0]
  - Theta : [-90.0, 90.0]
  - MSE XY : [0.0, 1.0]
  - MSE Z : [0.0, 1.0]
- Tracks :
  - Activate : True
  - Length : [1, 10000]
  - Instant D : [-5.0, 5.0]
  - D Coeff : [-5.0, 5.0]
  - Alpha : [-10.0, 10.0]
  - Speed : [0.0, 1.0]
  - Confinement : [-10.0, 10.0]

{'Save': True, 'Plane': [1, 100000], 'Localization X': [0, 100000], 'Localization Y': [0, 100000], 'Localization Z': [-2000, 2000], 'Localization Intensity': [0, 10000000], 'Localization Sigma X': [0.0, 10.0], 'Localization Sigma Y': [0.0, 10.0], 'Localization Circularity': [0.0, 1.0], 'Localization Theta': [-90.0, 90.0], 'Localization MSE XY': [0.0, 1.0], 'Localization MSE Z': [0.0, 1.0], 'Tracks Length': [1, 10000], 'Tracks Instant D': [-5.0, 5.0], 'Tracks D Coeff': [-5.0, 5.0], 'Tracks Alpha': [-10.0, 10.0], 'Tracks Speed': [0.0, 1.0], 'Tracks Confinement': [-10.0, 10.0]}

Log Test : Filters L

- Activate : True
- X : [2, 9]
- Y : [0, 100000]
- Z : [-2000, 2000]
- Intensity : [0, 10000000]
- Sigma X : [0.0, 10.0]
- Sigma Y : [0.0, 10.0]
- Circularity : [0.0, 1.0]
- Theta : [-90.0, 90.0]
- MSE XY : [0.0, 1.0]
- MSE Z : [0.0, 1.0]

{'X': [2, 9], 'Y': [0, 100000], 'Z': [-2000, 2000], 'Intensity': [0, 10000000], 'Sigma X': [0.0, 10.0], 'Sigma Y': [0.0, 10.0], 'Circularity': [0.0, 1.0], 'Theta': [-90.0, 90.0], 'MSE XY': [0.0, 1.0], 'MSE Z': [0.0, 1.0]}

Log Test : Filters T

- Activate : True
- Length : [2, 3]
- Instant D : [-5.0, 5.0]
- D Coeff : [-5.0, 5.0]
- Alpha : [-10.0, 10.0]
- Speed : [0.0, 1.0]
- Confinement : [-10.0, 10.0]

{'Length': [2, 3], 'Instant D': [-5.0, 5.0], 'D Coeff': [-5.0, 5.0], 'Alpha': [-10.0, 10.0], 'Speed': [0.0, 1.0], 'Confinement': [-10.0, 10.0]}

Settings Settings

Test Name	Status	Duration
Settings	✅	75ms
Settings Group Getter	✅	36ms
Settings Signal	✅	47ms

Settings Signal

Test Name	Status	Duration
Connect And Emit Direct	✅	1ms
Disconnect	✅	1ms
Block Simple Coalescence Last Value	✅	1ms
Block Without Emits No Output	✅	1ms
Nested Blocks Emit Once At Outer Exit	✅	1ms
Emit Default None Coalesced	✅	1ms
Block Flags Reset After Flush	✅	4ms
Blocked Returns Context Manager Instance	✅	1ms
Internal Block Begin End Paths	✅	1ms
Coalescence Overwrite Multiple Times	✅	1ms
Emit Direct After Previous Block	✅	1ms

Settings Types

Test Name	Status	Duration
Base Setting	✅	1ms
Create Setting From Dict	✅	5ms
Create Setting From Dict Fail	✅	1ms
Spin Int	✅	3ms
Spin Float	✅	2ms
Check Box	✅	2ms
Combo	✅	2ms
Browse File	✅	3ms
File List	✅	3ms
Check Range Int	✅	3ms
Check Range Float	✅	3ms
Button	✅	2ms

Tools Fileio

Test Name	Status	Duration
Add Extension	✅	1ms
Add Suffix	✅	1ms
Get Timestamp For Files	✅	1ms
Get Last File	✅	2ms
Extract Suffix	✅	1ms
Cleanup Process	✅	2ms
Load Dll	✅	1ms
Save Json	✅	2ms
Open Json	✅	1ms
Open Json Bad File	✅	1ms
Save Tif	✅	3ms
Save Tif 2D	✅	2ms
Save Tif Bad Stack	✅	1ms
Open Tif	✅	9ms
Open Tif Bad File	✅	1ms
Save Png	✅	5ms
Save Png Color	✅	9ms
Save Png Bad Sample	✅	1ms
Open Calibration Mat Bad File	✅	1ms
Open Calibration Mat	✅	3ms

Log Test : Get Timestamp For Files

Timestamp with hour : 20260504_142831
Timestamp without hour : 20260504

Log Test : Get Last File

D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\File-03.txt
D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\File-03.txt

Log Test : Load Dll

Unable to load the DLL 'PALMTracer_File.dll':
        Could not find module 'D:\a\palm-tracer\palm-tracer\palm_tracer\DLL\PALMTracer_File.dll' (or one of its dependencies). Try using the full path with constructor syntax.

Tools Filemigrator

Test Name	Status	Duration
Open	✅	3ms
Update Meta	✅	3ms
Open Old File	✅	3ms
Open Old Irregular File	✅	3ms
Column Migrator	✅	2ms
Analyze	✅	3ms
Migrate	✅	227ms

Log Test : Analyze

.

Tools Logger

Test Name	Status	Duration
Logger	✅	5ms
Logger Bad Use	✅	3ms
Logger With Use	✅	2ms

Tools Monitoring

Test Name	Status	Duration
Monitoring	✅	1.18s
Monitoring Save	✅	6.63s

Log Test : Monitoring

6 entrées.
Timestamps : [0.0, 0.2, 0.41, 0.61, 0.81, 1.0]
CPU Usage : [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
GPU Usage : [0, 0, 0, 0, 0, 0]
Memory Usage : [577.8671875, 577.8671875, 577.8671875, 577.8671875, 577.8671875, 577.84375]
Disk Usage : [0, 0.0, 0.0, 0.0, 0.0, 0.0]

Log Test : Monitoring Save

Simulating high CPU usage for 2 seconds...
CPU simulation complete.
Allocating 50 MB of memory...
Memory allocated. Holding for 2 seconds...
Releasing memory.
Writing a file of size 1 MB...
File written. Holding for 2 seconds...
Deleting the file...
Disk I/O simulation complete.
Kaleido doesn't work so well need update. No Image Saved.

Tools Ui

Test Name	Status	Duration
Builders	✅	3ms
Builders Spin	✅	2ms
Sync Spin	✅	1ms
Sync Button Group	✅	1ms
Print Error	✅	1ms
Print Warning	✅	1ms
Print Success	✅	1ms
Format Time	✅	1ms

Log Test : Print Error

Message d'erreur

Log Test : Print Warning

Message d'avertissement

Log Test : Print Success

Message de succes

Ui Alignmentwidget

Test Name	Status	Duration
Widget Creation	✅	4ms
Bad Load Tif	✅	4ms
Bad Load Coef	✅	7ms
Bad Compute	✅	4ms
Compute	✅	6ms
Bad Align	✅	5ms
Align	✅	40ms

Ui Astigmatism3Dwidget

Test Name	Status	Duration
Widget Creation	✅	897ms
Bad Load Loc	✅	135ms
Bad Load Model	✅	124ms
Bad Compute	✅	116ms
Check Loc	✅	171ms
Compute	✅	325ms
Compute Mean Beads	✅	326ms
Compute Remove Bead Col	✅	307ms
Compute Remove Multi	✅	304ms
Compute Z	✅	325ms
Compute Center Z	✅	315ms
Compute Bad Model	✅	317ms
Bad Estimate	✅	115ms
Estimate	✅	177ms
Estimate Backup	✅	185ms
Sync Spin	✅	152ms
Download	✅	174ms

Log Test : Download

D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref

Ui Baseplotlywidget

Test Name	Status	Duration
Creation	✅	41ms
Update Plotly	✅	44ms
Update Plotly No Js	✅	43ms
Download Plotly	✅	43ms
Export Plotly	✅	46ms

Log Test : Download Plotly

D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\output
D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\output

Log Test : Export Plotly

No figures to export.

Ui Filemigratorwidget

Test Name	Status	Duration
Widget Creation	✅	8ms
Bad Load	✅	5ms
Mirgate	✅	27ms

Ui Graphviewer

Test Name	Status	Duration
Widget Creation	✅	173ms
Add Stack	✅	230ms
Actualize	✅	310ms
Reset Filtered	✅	236ms
Update Filtered	✅	274ms
Update Plot	✅	516ms
Dual Source	✅	616ms
Get Plot Data	✅	649ms
Tracks Source	✅	178ms

Log Test : Add Stack

No valid settings file to load.

Ui Viewerhrwidget

Test Name	Status	Duration
Widget Creation	✅	1.53s
Add Stack	✅	1.25s
Change Source	✅	1.26s
Actualize	✅	1.26s
Reset Filtered	✅	1.28s
Update Filtered	✅	1.30s
Save	✅	1.30s
Screenshot	✅	1.31s
Crop	✅	1.33s
Generate Bad	✅	1.35s
Generate	✅	1.40s
Generate Drift	✅	1.41s

Log Test : Save

INFO: Image file saved successfully.

Log Test : Screenshot

INFO: Screenshot saved successfully.

Log Test : Generate

[04-05-2026 14:29:02] Log opened : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer\log-20260504_142902.log
[04-05-2026 14:29:02] Start Processing.
[04-05-2026 14:29:02] Output folder: D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer
[04-05-2026 14:29:02] Meta file saved.
[04-05-2026 14:29:02] Settings saved.
[04-05-2026 14:29:02] Localization disabled.
[04-05-2026 14:29:02] Beads Extraction disabled.
[04-05-2026 14:29:02] Tracking disabled.
[04-05-2026 14:29:02] Blinking Reconnection disabled.
[04-05-2026 14:29:02] Tracks Compute disabled.
[04-05-2026 14:29:02] Gallery generation disabled.
[04-05-2026 14:29:02] Graphical visualization disabled.
[04-05-2026 14:29:02] High-resolution visualization disabled.
[04-05-2026 14:29:02] Processing complete.
[04-05-2026 14:29:02] Log closed : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer\log-20260504_142902.log
Loading setting file 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer\settings-20260504_142902.json'.
       Loading files from the 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer' folder with the timestamp 20260504_142902.
 File 'localizations' loaded successfully.
   File 'localizations_filtered' not found.
    File 'localizations_corrected' not found.
   File 'localizations_corrected_filtered' not found.
  File 'beads' loaded successfully.
   File 'tracking' loaded successfully.
        File 'tracking_filtered' not found.
 File 'tracking_reconnected' not found.
      File 'tracking_reconnected_filtered' not found.
     File 'tracking_MSD' not found.
      File 'tracking_MSD_filtered' not found.
     File 'tracking_InstantD' not found.
 File 'tracking_InstantD_filtered' not found.
        File 'tracking_Fit' not found.
      File 'tracking_Fit_filtered' not found.
     Stack loaded successfully (size: (10, 128, 256)).

Ui Widget

Test Name	Status	Duration
Widget Creation	✅	1.34s
Widget On Load Setting	✅	1.32s
Widget Reset Setting	✅	1.34s
Widget Reset Layer	✅	1.85s
Widget Get Actual Image	✅	1.54s
Widget Add Detection Layers	✅	3.50s
Widget Preview	✅	2.02s
Widget Roi Filter Layer	✅	1.75s
Widget Auto Threshold	✅	1.60s
Widget Thread Process	✅	1.71s
Widget Keyblocker	✅	1.62s
Viewer3D	✅	1.70s

Log Test : Widget Get Actual Image

INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.

Log Test : Widget Roi Filter Layer

INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.

Log Test : Widget Thread Process

INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.
[04-05-2026 14:29:21] Log opened : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer\log-20260504_142921.log
[04-05-2026 14:29:21] Start Processing.
[04-05-2026 14:29:21] Output folder: D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer
[04-05-2026 14:29:21] Meta file saved.
[04-05-2026 14:29:21] Settings saved.
[04-05-2026 14:29:21] Localization disabled.
[04-05-2026 14:29:21] Beads Extraction disabled.
[04-05-2026 14:29:21] Tracking disabled.
[04-05-2026 14:29:21] Blinking Reconnection disabled.
[04-05-2026 14:29:21] Tracks Compute disabled.
[04-05-2026 14:29:21] Gallery generation disabled.
[04-05-2026 14:29:21] Graphical visualization disabled.
[04-05-2026 14:29:21] High-resolution visualization disabled.
[04-05-2026 14:29:21] Processing complete.
[04-05-2026 14:29:21] Log closed : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer\log-20260504_142921.log
Auto Threshold: 63.95

Log Test : Widget Keyblocker

INFO: Loading the setting file 'C:\Users\runneradmin\.palm_tracer\settings.json'.
INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.

Log Test : Viewer3D

WARNING: The file must contain the columns X, Y, Z, and Integrated Intensity.