Test Report Ci Windows-Latest 3.11

Environnement

Python	3.11.9
Platform	Windows-10-10.0.26100-SP0
CI	true
System	Windows
CPU	Intel(R) Xeon(R) Platinum 8370C CPU @ 2.80GHz (2.79 GHz - 2 Cores (4 Logical))
RAM	15.99 GB
GPU	Error detecting GPU: NVML Shared Library Not Found

Summary

240 tests collected, 240 passed ✅, 0 failed ❌, 0 skipped ⏭️ in 0:01:31s on 03/04/2026 at 07:46:07

Monitoring

Test Cases

Palmtracer

Test Name	Status	Duration
Reset Result	✅	63ms
Getter Localization	✅	46ms
Getter Beads	✅	52ms
Getter Tracks	✅	47ms
Getter Tracks Compute	✅	44ms
Get Status	✅	46ms
Getter Path	✅	46ms
Getter Stack	✅	43ms
Getter Suffix	✅	44ms
Load Bad Dll	✅	43ms
Load Nothing	✅	46ms
Load	✅	107ms
Process No Input	✅	45ms
Process Nothing	✅	184ms
Process Bad Dll	✅	44ms
Process Multiple Stack	✅	91ms
Process Only Localization	✅	92ms
Process Only Localization Spline Bad	✅	58ms
Process Only Localization Spline	✅	112ms
Process Only Beads Extraction No Beads	✅	82ms
Process Plane Discontinuous	✅	53ms
Process Only Beads Extraction	✅	95ms
Process Only Tracking	✅	306ms
Process Only Tracking Blinking	✅	78ms
Process Only Tracks Compute	✅	126ms
Process Only Visualization Hr	✅	273ms
Process Only Visualization Graph	✅	5.20s
Process Only Gallery	✅	81ms
Process All	✅	5.18s
Reset Filtered	✅	47ms
Update Filtered	✅	74ms
Save Filtered	✅	57ms
Filter Plan	✅	71ms
Filter All Localization	✅	117ms
Filter All Tracking	✅	94ms
Filter All Tracks Compute	✅	162ms
Filter Outside	✅	49ms
Add Color	✅	67ms

Log Test : Update Filtered

[03-04-2026 07:44:50] Log opened : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer/log-20260403_074450.log
[03-04-2026 07:44:50] Start Processing.
[03-04-2026 07:44:50] Output folder: D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer
[03-04-2026 07:44:50] Settings saved.
[03-04-2026 07:44:50] Meta file saved.
[03-04-2026 07:44:50] Localization disabled.
[03-04-2026 07:44:50]    Loading a pre-computed localization file.
[03-04-2026 07:44:50]      File 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer\localizations-20260403_074450.csv' loaded successfully, 451 localization(s) found.
[03-04-2026 07:44:50] Beads Extraction disabled.
[03-04-2026 07:44:50]   No pre-computed beads extraction data.
[03-04-2026 07:44:50] Tracking disabled.
[03-04-2026 07:44:50]     No pre-computed tracking data.
[03-04-2026 07:44:50] Blinking Reconnection disabled.
[03-04-2026 07:44:50] Tracks Computes disabled.
[03-04-2026 07:44:50]     No pre-computed tracks computes data.
[03-04-2026 07:44:50]  No pre-computed tracks computes data.
[03-04-2026 07:44:50]  No pre-computed tracks computes data.
[03-04-2026 07:44:50] High-resolution visualization disabled.
[03-04-2026 07:44:50] Graphical visualization disabled.
[03-04-2026 07:44:50] Gallery generation disabled.
[03-04-2026 07:44:50] Processing complete.
[03-04-2026 07:44:50] Log closed : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer/log-20260403_074450.log

Processing Astigmatism3D

Test Name	Status	Duration
Get Z From Planes	✅	2ms
Get Z From Step	✅	1ms
Remove Multi Loc	✅	11ms
Sigma Model	✅	1ms
Model Validity	✅	3ms
Model Projection Validity	✅	16ms

Log Test : Remove Multi Loc

Not all valid columns in localizations. Unable to remove ambiguous localizations reliably.
All planes contain multiple localizations. Unable to remove ambiguous localizations reliably.

Processing Drift

Test Name	Status	Duration
Extract Bead Bad Input	✅	6ms
Extract Beads No Match Returns Empty	✅	5ms
Assign Tracks No Pairs	✅	1ms
Assign Tracks Skip Used Track	✅	1ms
Extract Beads	✅	82ms
Remove Beads	✅	10ms
Get Drift Bad Input	✅	6ms
Get Drift	✅	30ms
Apply Drift Bad Input	✅	2ms
Apply Drift	✅	18ms
Chain Drift	✅	25ms
Drift Correction	✅	33ms

Processing Gallery

Test Name	Status	Duration
Make Gallery	✅	10ms

Processing Grapher

Test Name	Status	Duration
Blank	✅	252ms
Histogram	✅	709ms
Scatter	✅	446ms
Cloud	✅	1.42s
Astigmatism3D Curve	✅	86ms

Processing Palm

Test Name	Status	Duration
Palm Dll Valid	✅	2ms
Palm Cpu Empty Result	✅	5ms
Palm Cpu Image	✅	908ms
Palm Cpu Stack	✅	4.70s
Palm Cpu Stack Plane Selection	✅	267ms
Palm Cpu Stack Dll Check Quadrant	✅	351ms
Cpu Auto Threshold	✅	53ms
Tracking	✅	7.18s
Blinking Reconnection	✅	248ms
Tracks Compute	✅	64ms
Align	✅	216ms
Wavelett	✅	54ms
Astigmatism 3D Calibration	✅	10ms
Astigmatism 3D Estimation	✅	4ms

Log Test : Palm Cpu Image

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_0_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_1_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_2_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_3_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)

Log Test : Palm Cpu Stack

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_0_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_1_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_2_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_3_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_0_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_1_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_2_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_3_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_4_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)

Log Test : Palm Cpu Stack Plane Selection

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-plane_select-103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 227 Points comparés, 227 Points identiques (100.00%)

Log Test : Palm Cpu Stack Dll Check Quadrant

Comparaison terminée : 269 Points comparés, 269 Points identiques (100.00%)

Log Test : Tracking

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_0_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 224 Points comparés, 224 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_1_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 223 Points comparés, 223 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_2_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 225 Points comparés, 225 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_3_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 222 Points comparés, 222 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_4_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 222 Points comparés, 222 Points identiques (100.00%)
Fichier de localisations 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_5_1.0_0.0_7.csv' indisponible.
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_0_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 214 Points comparés, 214 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_1_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 212 Points comparés, 212 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_2_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 217 Points comparés, 217 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_3_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 211 Points comparés, 211 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_4_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 214 Points comparés, 214 Points identiques (100.00%)
Fichier de localisations 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_5_1.0_0.0_7.csv' indisponible.

Log Test : Blinking Reconnection

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking-blinking-0.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking-blinking-1.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking-blinking-2.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)

Log Test : Tracks Compute

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-MSD-True.csv'
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-True.csv'
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-MSD-False.csv'
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-False.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-1.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-2.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-3.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering

Processing Parsing

Test Name	Status	Duration
Get Meta	✅	3ms
Rearrange Dataframe Columns	✅	3ms
Log10 Dataframe	✅	4ms
Parse Irregular Array	✅	2ms
Parse Result	✅	20ms
Parse Localization For Tracking	✅	5ms

Processing Renderer

Test Name	Status	Duration
Set Size	✅	1ms
Get Localization Colors	✅	7ms
Get Tracks Colors	✅	30ms
Draw Line	✅	4ms
Localizations	✅	1ms
Tracks	✅	1ms

Processing Visualization

Test Name	Status	Duration
Normalize Data	✅	1ms
Render Hr Image	✅	24ms
Render Hr Image Bad Input	✅	3ms
Render Tracks Image	✅	25ms
Render Tracks Image Bad Input	✅	6ms
Render Roi	✅	60ms
Render Roi Bad Input	✅	2ms
Plot Histogram	✅	1.08s
Plot Histogram Bad Input	✅	168ms
Plot Violin	✅	1.06s
Plot Violin Bad Input	✅	85ms
Plot Heatmap	✅	475ms
Plot Heatmap Bad Input	✅	85ms

Settings Groups

Test Name	Status	Duration
Base Group	✅	2ms
Batch	✅	70ms
Batch Get Path	✅	7ms
Batch Get Stacks	✅	17ms
Calibration	✅	6ms
Localization	✅	17ms
Gaussian Fit	✅	6ms
Spline Fit	✅	4ms
Beads	✅	4ms
Tracking	✅	3ms
Tracks Blinking Reconnection	✅	6ms
Tracks Computes	✅	6ms
Gallery	✅	4ms
Visualization Hr	✅	7ms
Visualization Graph	✅	4ms
Filtering	✅	47ms
Filtering L	✅	26ms
Filtering T	✅	16ms

Log Test : Batch

- Activate : True
- Files : -1
- Mode : 0

{'Files': -1, 'Mode': 0}

Log Test : Batch Get Stacks

Error when concatenating stacks (they will be processed independently):
ValueError: all the input array dimensions except for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 128 and the array at index 1 has size 256

Log Test : Calibration

- Activate : True
- Pixel Size : 0.32
- Exposure : 0.05
- Intensity : 0.012

{'Pixel Size': 0.32, 'Exposure': 0.05, 'Intensity': 0.012}

Log Test : Localization

- Activate : True
- Preview : True
- Threshold : 90.0
- Auto Threshold : True
- ROI Shape : 0
- ROI Size : 7
- Watershed : True
- Fit : 0
- Gaussian Fit :
  - Activate : True
  - Mode : 0
  - Sigma : 1.0
  - Theta : 0.0
- Spline Fit :
  - Activate : True
  - Sensor : 0
  - Variance Map : 
  - File : 

{'Preview': True, 'Threshold': 90.0, 'Auto Threshold': True, 'ROI Shape': 0, 'ROI Size': 7, 'Watershed': True, 'Fit': 0, 'Gaussian Fit Mode': 0, 'Gaussian Fit Sigma': 1.0, 'Gaussian Fit Theta': 0.0, 'Spline Fit Sensor': 0, 'Spline Fit Variance Map': '', 'Spline Fit File': ''}

Log Test : Gaussian Fit

- Activate : True
- Mode : 2
- Sigma : 1.0
- Theta : 0.0

{'Mode': 2, 'Sigma': 1.0, 'Theta': 0.0}

Log Test : Spline Fit

- Activate : True
- Sensor : 1
- Variance Map : 
- File : 

{'Sensor': 1, 'Variance Map': '', 'File': ''}

Log Test : Beads

- Activate : True
- Max Distance : 2.0
- 3D : False

{'Max Distance': 2.0, '3D': False}

Log Test : Tracking

- Activate : True
- Max Distance : 2.0

{'Max Distance': 2.0}

Log Test : Tracks Blinking Reconnection

- Activate : True
- Mode : 1
- Max Duration : 1
- Max Distance : 1.0

{'Mode': 1, 'Max Duration': 1, 'Max Distance': 1.0}

Log Test : Tracks Computes

- Activate : True
- MSD : True
- Instant Diffusion : False
- Fit Length : 4
- 3D : False
- Log Scale : False
- Fit : 0

{'MSD': True, 'Instant Diffusion': False, 'Fit Length': 4, '3D': False, 'Log Scale': False, 'Fit': 0}

Log Test : Gallery

- Activate : True
- ROI Size : 11
- ROIs Per Line : 30

{'ROI Size': 11, 'ROIs Per Line': 30}

Log Test : Visualization Hr

- Activate : True
- Ratio : 1
- Type : 0
- Source L : 1
- Source T : 1

{'Ratio': 1, 'Type': 0, 'Source L': 1, 'Source T': 1}

Log Test : Visualization Graph

- Activate : True
- Mode : 1
- Source : 0

{'Mode': 1, 'Source': 0}

Log Test : Filtering

FilteringL id: 1813625063504
X id: 1813729163408
limits id 1813757650816
- Activate : True
- Save : True
- Plane : [1, 100000]
- Localization :
  - Activate : True
  - X : [0, 100000]
  - Y : [0, 100000]
  - Z : [-1000, 1000]
  - Intensity : [0, 10000000]
  - Sigma X : [0.0, 10.0]
  - Sigma Y : [0.0, 10.0]
  - Circularity : [0.0, 1.0]
  - Theta : [-180.0, 180.0]
  - MSE XY : [0.0, 1.0]
  - MSE Z : [0.0, 1.0]
- Tracks :
  - Activate : True
  - Length : [1, 10000]
  - Instant D : [-5.0, 5.0]
  - D Coeff : [-5.0, 5.0]
  - Alpha : [-10.0, 10.0]
  - Speed : [0.0, 1.0]
  - Confinement : [-10.0, 10.0]

{'Save': True, 'Plane': [1, 100000], 'Localization X': [0, 100000], 'Localization Y': [0, 100000], 'Localization Z': [-1000, 1000], 'Localization Intensity': [0, 10000000], 'Localization Sigma X': [0.0, 10.0], 'Localization Sigma Y': [0.0, 10.0], 'Localization Circularity': [0.0, 1.0], 'Localization Theta': [-180.0, 180.0], 'Localization MSE XY': [0.0, 1.0], 'Localization MSE Z': [0.0, 1.0], 'Tracks Length': [1, 10000], 'Tracks Instant D': [-5.0, 5.0], 'Tracks D Coeff': [-5.0, 5.0], 'Tracks Alpha': [-10.0, 10.0], 'Tracks Speed': [0.0, 1.0], 'Tracks Confinement': [-10.0, 10.0]}

Log Test : Filtering L

FilteringL id: 1813624738832
X id: 1813786569232
limits id 1813729372416
- Activate : True
- X : [2, 9]
- Y : [0, 100000]
- Z : [-1000, 1000]
- Intensity : [0, 10000000]
- Sigma X : [0.0, 10.0]
- Sigma Y : [0.0, 10.0]
- Circularity : [0.0, 1.0]
- Theta : [-180.0, 180.0]
- MSE XY : [0.0, 1.0]
- MSE Z : [0.0, 1.0]

{'X': [2, 9], 'Y': [0, 100000], 'Z': [-1000, 1000], 'Intensity': [0, 10000000], 'Sigma X': [0.0, 10.0], 'Sigma Y': [0.0, 10.0], 'Circularity': [0.0, 1.0], 'Theta': [-180.0, 180.0], 'MSE XY': [0.0, 1.0], 'MSE Z': [0.0, 1.0]}

Log Test : Filtering T

- Activate : True
- Length : [2, 3]
- Instant D : [-5.0, 5.0]
- D Coeff : [-5.0, 5.0]
- Alpha : [-10.0, 10.0]
- Speed : [0.0, 1.0]
- Confinement : [-10.0, 10.0]

{'Length': [2, 3], 'Instant D': [-5.0, 5.0], 'D Coeff': [-5.0, 5.0], 'Alpha': [-10.0, 10.0], 'Speed': [0.0, 1.0], 'Confinement': [-10.0, 10.0]}

Settings Settings

Test Name	Status	Duration
Settings	✅	90ms
Settings Group Getter	✅	41ms
Settings Signal	✅	49ms

Settings Signal

Test Name	Status	Duration
Connect And Emit Direct	✅	1ms
Disconnect	✅	1ms
Block Simple Coalescence Last Value	✅	1ms
Block Without Emits No Output	✅	1ms
Nested Blocks Emit Once At Outer Exit	✅	1ms
Emit Default None Coalesced	✅	1ms
Block Flags Reset After Flush	✅	1ms
Blocked Returns Context Manager Instance	✅	1ms
Internal Block Begin End Paths	✅	1ms
Coalescence Overwrite Multiple Times	✅	1ms
Emit Direct After Previous Block	✅	1ms

Settings Types

Test Name	Status	Duration
Base Setting	✅	2ms
Create Setting From Dict	✅	8ms
Create Setting From Dict Fail	✅	1ms
Spin Int	✅	4ms
Spin Float	✅	3ms
Check Box	✅	2ms
Combo	✅	3ms
Browse File	✅	3ms
File List	✅	4ms
Check Range Int	✅	4ms
Check Range Float	✅	4ms
Button	✅	2ms

Tools Fileio

Test Name	Status	Duration
Add Extension	✅	1ms
Add Suffix	✅	1ms
Get Timestamp For Files	✅	1ms
Get Last File	✅	3ms
Extract Suffix	✅	1ms
Load Dll	✅	2ms
Save Json	✅	2ms
Open Json	✅	1ms
Open Json Bad File	✅	1ms
Save Tif	✅	4ms
Save Tif 2D	✅	3ms
Save Tif Bad Stack	✅	1ms
Open Tif	✅	16ms
Open Tif Bad File	✅	2ms
Save Png	✅	10ms
Save Png Color	✅	16ms
Save Png Bad Sample	✅	1ms
Open Calibration Mat Bad File	✅	1ms
Open Calibration Mat	✅	5ms

Log Test : Get Timestamp For Files

Timestamp with hour : 20260403_074511
Timestamp without hour : 20260403

Log Test : Get Last File

D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\File-03.txt
D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\File-03.txt

Log Test : Load Dll

Unable to load the DLL 'PALMTracer_File.dll':
        Could not find module 'D:\a\palm-tracer\palm-tracer\palm_tracer\DLL\PALMTracer_File.dll' (or one of its dependencies). Try using the full path with constructor syntax.

Tools Filemigrator

Test Name	Status	Duration
Open	✅	4ms
Update Meta	✅	5ms
Open Old File	✅	5ms
Open Old Irregular File	✅	6ms
Column Migrator	✅	5ms
Analyze	✅	6ms
Migrate	✅	294ms

Log Test : Analyze

.

Tools Logger

Test Name	Status	Duration
Logger	✅	6ms
Logger Bad Use	✅	2ms
Logger With Use	✅	3ms

Tools Monitoring

Test Name	Status	Duration
Monitoring	✅	1.20s
Monitoring Save	✅	6.83s

Log Test : Monitoring

6 entrées.
Timestamps : [0.0, 0.2, 0.41, 0.61, 0.81, 1.0]
CPU Usage : [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
GPU Usage : [0, 0, 0, 0, 0, 0]
Memory Usage : [546.1953125, 546.1953125, 546.1953125, 546.1953125, 546.1953125, 546.171875]
Disk Usage : [0, 0.0, 0.0, 0.0, 0.0, 0.0]

Log Test : Monitoring Save

Simulating high CPU usage for 2 seconds...
CPU simulation complete.
Allocating 50 MB of memory...
Memory allocated. Holding for 2 seconds...
Releasing memory.
Writing a file of size 1 MB...
File written. Holding for 2 seconds...
Deleting the file...
Disk I/O simulation complete.
Kaleido doesn't work so well need update. No Image Saved.

Tools Ui

Test Name	Status	Duration
Builders	✅	3ms
Builders Spin	✅	3ms
Print Error	✅	1ms
Print Warning	✅	1ms
Print Success	✅	1ms
Format Time	✅	1ms

Log Test : Print Error

Message d'erreur

Log Test : Print Warning

Message d'avertissement

Log Test : Print Success

Message de succes

Ui Alignmentwidget

Test Name	Status	Duration
Widget Creation	✅	5ms
Bad Load Tif	✅	6ms
Bad Load Coef	✅	9ms
Bad Compute	✅	5ms
Compute	✅	10ms
Bad Align	✅	8ms
Align	✅	63ms

Ui Astigmatism3Dwidget

Test Name	Status	Duration
Widget Creation	✅	360ms
Bad Load Loc	✅	175ms
Bad Load Model	✅	159ms
Bad Compute	✅	150ms
Compute	✅	378ms
Compute Remove Multi	✅	373ms
Compute Z	✅	365ms
Compute Center Z	✅	371ms
Bad Estimate	✅	201ms
Estimate	✅	272ms
Estimate Backup	✅	278ms
Sync Spin	✅	198ms
Download	✅	215ms

Log Test : Download

D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref

Ui Baseplotlywidget

Test Name	Status	Duration
Creation	✅	48ms
Update Plotly	✅	58ms
Update Plotly No Js	✅	60ms
Download Plotly	✅	57ms
Export Plotly	✅	59ms

Log Test : Download Plotly

D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\output
D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\output

Log Test : Export Plotly

No figures to export.

Ui Filemigratorwidget

Test Name	Status	Duration
Widget Creation	✅	7ms
Bad Load	✅	7ms
Mirgate	✅	36ms

Ui Graphviewer

Test Name	Status	Duration
Widget Creation	✅	279ms
Add Stack	✅	389ms
Actualize	✅	615ms
Reset Filtered	✅	385ms
Update Filtered	✅	497ms
Update Plot	✅	945ms
Dual Source	✅	487ms
Get Plot Data	✅	1.07s
Tracks Source	✅	284ms

Log Test : Add Stack

No valid settings file to load.

Ui Viewerhrwidget

Test Name	Status	Duration
Widget Creation	✅	1.77s
Add Stack	✅	1.37s
Change Source	✅	1.39s
Actualize	✅	1.41s
Reset Filtered	✅	1.44s
Update Filtered	✅	1.44s
Save	✅	1.44s
Generate	✅	1.46s
Generate Drift	✅	1.52s

Log Test : Save

INFO: Image file saved successfully.

Ui Widget

Test Name	Status	Duration
Widget Creation	✅	1.38s
Widget On Load Setting	✅	1.38s
Widget Reset Setting	✅	1.38s
Widget Reset Layer	✅	2.05s
Widget Get Actual Image	✅	1.64s
Widget Add Detection Layers	✅	4.21s
Widget Preview	✅	2.20s
Widget Roi Filter Layer	✅	1.88s
Widget Auto Threshold	✅	1.66s
Widget Thread Process	✅	1.70s
Widget Keyblocker	✅	1.69s
Viewer3D	✅	1.82s

Log Test : Widget Get Actual Image

INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.

Log Test : Widget Roi Filter Layer

INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.

Log Test : Widget Thread Process

INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.
INFO: Thread Process done.
[03-04-2026 07:46:01] Log opened : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer/log-20260403_074601.log
[03-04-2026 07:46:01] Start Processing.
[03-04-2026 07:46:01] Output folder: D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer
[03-04-2026 07:46:01] Settings saved.
[03-04-2026 07:46:01] Meta file saved.
[03-04-2026 07:46:01] Localization disabled.
[03-04-2026 07:46:01]  No pre-computed localization data.
[03-04-2026 07:46:01] Beads Extraction disabled.
[03-04-2026 07:46:01]         No pre-computed beads extraction data.
[03-04-2026 07:46:01] Tracking disabled.
[03-04-2026 07:46:01]     No pre-computed tracking data.
[03-04-2026 07:46:01] Blinking Reconnection disabled.
[03-04-2026 07:46:01] Tracks Computes disabled.
[03-04-2026 07:46:01]     No pre-computed tracks computes data.
[03-04-2026 07:46:01]  No pre-computed tracks computes data.
[03-04-2026 07:46:01]  No pre-computed tracks computes data.
[03-04-2026 07:46:01] High-resolution visualization disabled.
[03-04-2026 07:46:01] Graphical visualization disabled.
[03-04-2026 07:46:01] Gallery generation disabled.
[03-04-2026 07:46:01] Processing complete.
[03-04-2026 07:46:01] Log closed : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer/log-20260403_074601.log
INFO: Thread Process done.
Auto Threshold: 63.95
INFO: Thread Process done.

Log Test : Widget Keyblocker

INFO: Loading the setting file 'C:\Users\runneradmin\.palm_tracer\settings.json'.
INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.

Log Test : Viewer3D

WARNING: The file must contain the columns X, Y, Z, and Integrated Intensity.