Test Report Ci Windows-Latest 3.10

Environnement

Python

3.10.11

Platform

Windows-10-10.0.26100-SP0

CI

true

System

Windows

CPU

AMD EPYC 7763 64-Core Processor (2.44 GHz - 2 Cores (4 Logical))

RAM

15.99 GB

GPU

Error detecting GPU: NVML Shared Library Not Found

Summary

240 tests collected, 240 passed ✅, 0 failed ❌, 0 skipped ⏭️ in 0:02:02s on 03/04/2026 at 07:46:56

Monitoring

Test Cases

Palmtracer

Test Name

Status

Duration

Reset Result

✅

78ms

Getter Localization

✅

55ms

Getter Beads

✅

51ms

Getter Tracks

✅

53ms

Getter Tracks Compute

✅

50ms

Get Status

✅

58ms

Getter Path

✅

49ms

Getter Stack

✅

51ms

Getter Suffix

✅

50ms

Load Bad Dll

✅

58ms

Load Nothing

✅

61ms

Load

✅

151ms

Process No Input

✅

56ms

Process Nothing

✅

247ms

Process Bad Dll

✅

62ms

Process Multiple Stack

✅

117ms

Process Only Localization

✅

116ms

Process Only Localization Spline Bad

✅

81ms

Process Only Localization Spline

✅

132ms

Process Only Beads Extraction No Beads

✅

116ms

Process Plane Discontinuous

✅

73ms

Process Only Beads Extraction

✅

119ms

Process Only Tracking

✅

334ms

Process Only Tracking Blinking

✅

93ms

Process Only Tracks Compute

✅

155ms

Process Only Visualization Hr

✅

300ms

Process Only Visualization Graph

✅

5.74s

Process Only Gallery

✅

110ms

Process All

✅

6.10s

Reset Filtered

✅

74ms

Update Filtered

✅

114ms

Save Filtered

✅

73ms

Filter Plan

✅

101ms

Filter All Localization

✅

664ms

Filter All Tracking

✅

136ms

Filter All Tracks Compute

✅

221ms

Filter Outside

✅

68ms

Add Color

✅

95ms
Log Test : Update Filtered 
[03-04-2026 07:45:10] Log opened : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer/log-20260403_074510.log
[03-04-2026 07:45:10] Start Processing.
[03-04-2026 07:45:10] Output folder: D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer
[03-04-2026 07:45:10] Settings saved.
[03-04-2026 07:45:10] Meta file saved.
[03-04-2026 07:45:10] Localization disabled.
[03-04-2026 07:45:10]    Loading a pre-computed localization file.
[03-04-2026 07:45:10]      File 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer\localizations-20260403_074510.csv' loaded successfully, 451 localization(s) found.
[03-04-2026 07:45:10] Beads Extraction disabled.
[03-04-2026 07:45:10]   No pre-computed beads extraction data.
[03-04-2026 07:45:10] Tracking disabled.
[03-04-2026 07:45:10]     No pre-computed tracking data.
[03-04-2026 07:45:10] Blinking Reconnection disabled.
[03-04-2026 07:45:10] Tracks Computes disabled.
[03-04-2026 07:45:10]     No pre-computed tracks computes data.
[03-04-2026 07:45:10]  No pre-computed tracks computes data.
[03-04-2026 07:45:10]  No pre-computed tracks computes data.
[03-04-2026 07:45:10] High-resolution visualization disabled.
[03-04-2026 07:45:10] Graphical visualization disabled.
[03-04-2026 07:45:10] Gallery generation disabled.
[03-04-2026 07:45:10] Processing complete.
[03-04-2026 07:45:10] Log closed : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer/log-20260403_074510.log

Processing Astigmatism3D

Test Name

Status

Duration

Get Z From Planes

✅

2ms

Get Z From Step

✅

1ms

Remove Multi Loc

✅

13ms

Sigma Model

✅

2ms

Model Validity

✅

3ms

Model Projection Validity

✅

16ms
Log Test : Remove Multi Loc 
Not all valid columns in localizations. Unable to remove ambiguous localizations reliably.
All planes contain multiple localizations. Unable to remove ambiguous localizations reliably.

Processing Drift

Test Name

Status

Duration

Extract Bead Bad Input

✅

10ms

Extract Beads No Match Returns Empty

✅

5ms

Assign Tracks No Pairs

✅

1ms

Assign Tracks Skip Used Track

✅

1ms

Extract Beads

✅

90ms

Remove Beads

✅

12ms

Get Drift Bad Input

✅

6ms

Get Drift

✅

28ms

Apply Drift Bad Input

✅

3ms

Apply Drift

✅

17ms

Chain Drift

✅

23ms

Drift Correction

✅

41ms

Processing Grapher

Test Name

Status

Duration

Blank

✅

301ms

Histogram

✅

801ms

Scatter

✅

485ms

Cloud

✅

1.60s

Astigmatism3D Curve

✅

95ms

Processing Palm

Test Name

Status

Duration

Palm Dll Valid

✅

2ms

Palm Cpu Empty Result

✅

8ms

Palm Cpu Image

✅

1.02s

Palm Cpu Stack

✅

4.05s

Palm Cpu Stack Plane Selection

✅

232ms

Palm Cpu Stack Dll Check Quadrant

✅

328ms

Cpu Auto Threshold

✅

69ms

Tracking

✅

7.80s

Blinking Reconnection

✅

300ms

Tracks Compute

✅

89ms

Align

✅

251ms

Wavelett

✅

76ms

Astigmatism 3D Calibration

✅

14ms

Astigmatism 3D Estimation

✅

8ms
Log Test : Palm Cpu Image 
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_0_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_1_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_2_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_3_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Log Test : Palm Cpu Stack 
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_0_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_1_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_2_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_3_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_0_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_1_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_2_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_3_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_4_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Log Test : Palm Cpu Stack Plane Selection 
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-plane_select-103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 227 Points comparés, 227 Points identiques (100.00%)
Log Test : Palm Cpu Stack Dll Check Quadrant 
Comparaison terminée : 269 Points comparés, 269 Points identiques (100.00%)
Log Test : Tracking 
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_0_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 224 Points comparés, 224 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_1_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 223 Points comparés, 223 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_2_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 225 Points comparés, 225 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_3_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 222 Points comparés, 222 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_4_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 222 Points comparés, 222 Points identiques (100.00%)
Fichier de localisations 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_5_1.0_0.0_7.csv' indisponible.
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_0_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 214 Points comparés, 214 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_1_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 212 Points comparés, 212 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_2_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 217 Points comparés, 217 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_3_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 211 Points comparés, 211 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_4_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 214 Points comparés, 214 Points identiques (100.00%)
Fichier de localisations 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_5_1.0_0.0_7.csv' indisponible.
Log Test : Blinking Reconnection 
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking-blinking-0.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking-blinking-1.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking-blinking-2.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)
Log Test : Tracks Compute 
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-MSD-True.csv'
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-True.csv'
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-MSD-False.csv'
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-False.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-1.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-2.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-3.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering

Processing Parsing

Test Name

Status

Duration

Get Meta

✅

4ms

Rearrange Dataframe Columns

✅

3ms

Log10 Dataframe

✅

8ms

Parse Irregular Array

✅

2ms

Parse Result

✅

23ms

Parse Localization For Tracking

✅

5ms

Processing Renderer

Test Name

Status

Duration

Set Size

✅

1ms

Get Localization Colors

✅

10ms

Get Tracks Colors

✅

35ms

Draw Line

✅

2ms

Localizations

✅

1ms

Tracks

✅

2ms

Processing Visualization

Test Name

Status

Duration

Normalize Data

✅

1ms

Render Hr Image

✅

26ms

Render Hr Image Bad Input

✅

3ms

Render Tracks Image

✅

25ms

Render Tracks Image Bad Input

✅

6ms

Render Roi

✅

57ms

Render Roi Bad Input

✅

2ms

Plot Histogram

✅

1.25s

Plot Histogram Bad Input

✅

206ms

Plot Violin

✅

1.02s

Plot Violin Bad Input

✅

100ms

Plot Heatmap

✅

558ms

Plot Heatmap Bad Input

✅

101ms

Settings Groups

Test Name

Status

Duration

Base Group

✅

4ms

Batch

✅

118ms

Batch Get Path

✅

5ms

Batch Get Stacks

✅

23ms

Calibration

✅

12ms

Localization

✅

25ms

Gaussian Fit

✅

8ms

Spline Fit

✅

6ms

Beads

✅

5ms

Tracking

✅

6ms

Tracks Blinking Reconnection

✅

7ms

Tracks Computes

✅

8ms

Gallery

✅

5ms

Visualization Hr

✅

13ms

Visualization Graph

✅

5ms

Filtering

✅

67ms

Filtering L

✅

35ms

Filtering T

✅

21ms
Log Test : Batch 
- Activate : True
- Files : -1
- Mode : 0

{'Files': -1, 'Mode': 0}
Log Test : Batch Get Stacks 
Error when concatenating stacks (they will be processed independently):
ValueError: all the input array dimensions except for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 128 and the array at index 1 has size 256
Log Test : Calibration 
- Activate : True
- Pixel Size : 0.32
- Exposure : 0.05
- Intensity : 0.012

{'Pixel Size': 0.32, 'Exposure': 0.05, 'Intensity': 0.012}
Log Test : Localization 
- Activate : True
- Preview : True
- Threshold : 90.0
- Auto Threshold : True
- ROI Shape : 0
- ROI Size : 7
- Watershed : True
- Fit : 0
- Gaussian Fit :
  - Activate : True
  - Mode : 0
  - Sigma : 1.0
  - Theta : 0.0
- Spline Fit :
  - Activate : True
  - Sensor : 0
  - Variance Map : 
  - File : 

{'Preview': True, 'Threshold': 90.0, 'Auto Threshold': True, 'ROI Shape': 0, 'ROI Size': 7, 'Watershed': True, 'Fit': 0, 'Gaussian Fit Mode': 0, 'Gaussian Fit Sigma': 1.0, 'Gaussian Fit Theta': 0.0, 'Spline Fit Sensor': 0, 'Spline Fit Variance Map': '', 'Spline Fit File': ''}
Log Test : Gaussian Fit 
- Activate : True
- Mode : 2
- Sigma : 1.0
- Theta : 0.0

{'Mode': 2, 'Sigma': 1.0, 'Theta': 0.0}
Log Test : Spline Fit 
- Activate : True
- Sensor : 1
- Variance Map : 
- File : 

{'Sensor': 1, 'Variance Map': '', 'File': ''}
Log Test : Beads 
- Activate : True
- Max Distance : 2.0
- 3D : False

{'Max Distance': 2.0, '3D': False}
Log Test : Tracking 
- Activate : True
- Max Distance : 2.0

{'Max Distance': 2.0}
Log Test : Tracks Blinking Reconnection 
- Activate : True
- Mode : 1
- Max Duration : 1
- Max Distance : 1.0

{'Mode': 1, 'Max Duration': 1, 'Max Distance': 1.0}
Log Test : Tracks Computes 
- Activate : True
- MSD : True
- Instant Diffusion : False
- Fit Length : 4
- 3D : False
- Log Scale : False
- Fit : 0

{'MSD': True, 'Instant Diffusion': False, 'Fit Length': 4, '3D': False, 'Log Scale': False, 'Fit': 0}
Log Test : Gallery 
- Activate : True
- ROI Size : 11
- ROIs Per Line : 30

{'ROI Size': 11, 'ROIs Per Line': 30}
Log Test : Visualization Hr 
- Activate : True
- Ratio : 1
- Type : 0
- Source L : 1
- Source T : 1

{'Ratio': 1, 'Type': 0, 'Source L': 1, 'Source T': 1}
Log Test : Visualization Graph 
- Activate : True
- Mode : 1
- Source : 0

{'Mode': 1, 'Source': 0}
Log Test : Filtering 
FilteringL id: 1753395193328
X id: 1753395195776
limits id 1753397612224
- Activate : True
- Save : True
- Plane : [1, 100000]
- Localization :
  - Activate : True
  - X : [0, 100000]
  - Y : [0, 100000]
  - Z : [-1000, 1000]
  - Intensity : [0, 10000000]
  - Sigma X : [0.0, 10.0]
  - Sigma Y : [0.0, 10.0]
  - Circularity : [0.0, 1.0]
  - Theta : [-180.0, 180.0]
  - MSE XY : [0.0, 1.0]
  - MSE Z : [0.0, 1.0]
- Tracks :
  - Activate : True
  - Length : [1, 10000]
  - Instant D : [-5.0, 5.0]
  - D Coeff : [-5.0, 5.0]
  - Alpha : [-10.0, 10.0]
  - Speed : [0.0, 1.0]
  - Confinement : [-10.0, 10.0]

{'Save': True, 'Plane': [1, 100000], 'Localization X': [0, 100000], 'Localization Y': [0, 100000], 'Localization Z': [-1000, 1000], 'Localization Intensity': [0, 10000000], 'Localization Sigma X': [0.0, 10.0], 'Localization Sigma Y': [0.0, 10.0], 'Localization Circularity': [0.0, 1.0], 'Localization Theta': [-180.0, 180.0], 'Localization MSE XY': [0.0, 1.0], 'Localization MSE Z': [0.0, 1.0], 'Tracks Length': [1, 10000], 'Tracks Instant D': [-5.0, 5.0], 'Tracks D Coeff': [-5.0, 5.0], 'Tracks Alpha': [-10.0, 10.0], 'Tracks Speed': [0.0, 1.0], 'Tracks Confinement': [-10.0, 10.0]}
Log Test : Filtering L 
FilteringL id: 1753397765040
X id: 1753397763792
limits id 1753396829824
- Activate : True
- X : [2, 9]
- Y : [0, 100000]
- Z : [-1000, 1000]
- Intensity : [0, 10000000]
- Sigma X : [0.0, 10.0]
- Sigma Y : [0.0, 10.0]
- Circularity : [0.0, 1.0]
- Theta : [-180.0, 180.0]
- MSE XY : [0.0, 1.0]
- MSE Z : [0.0, 1.0]

{'X': [2, 9], 'Y': [0, 100000], 'Z': [-1000, 1000], 'Intensity': [0, 10000000], 'Sigma X': [0.0, 10.0], 'Sigma Y': [0.0, 10.0], 'Circularity': [0.0, 1.0], 'Theta': [-180.0, 180.0], 'MSE XY': [0.0, 1.0], 'MSE Z': [0.0, 1.0]}
Log Test : Filtering T 
- Activate : True
- Length : [2, 3]
- Instant D : [-5.0, 5.0]
- D Coeff : [-5.0, 5.0]
- Alpha : [-10.0, 10.0]
- Speed : [0.0, 1.0]
- Confinement : [-10.0, 10.0]

{'Length': [2, 3], 'Instant D': [-5.0, 5.0], 'D Coeff': [-5.0, 5.0], 'Alpha': [-10.0, 10.0], 'Speed': [0.0, 1.0], 'Confinement': [-10.0, 10.0]}

Settings Settings

Test Name

Status

Duration

Settings

✅

126ms

Settings Group Getter

✅

53ms

Settings Signal

✅

69ms

Settings Signal

Test Name

Status

Duration

Connect And Emit Direct

✅

2ms

Disconnect

✅

1ms

Block Simple Coalescence Last Value

✅

1ms

Block Without Emits No Output

✅

1ms

Nested Blocks Emit Once At Outer Exit

✅

1ms

Emit Default None Coalesced

✅

1ms

Block Flags Reset After Flush

✅

1ms

Blocked Returns Context Manager Instance

✅

1ms

Internal Block Begin End Paths

✅

1ms

Coalescence Overwrite Multiple Times

✅

1ms

Emit Direct After Previous Block

✅

1ms

Settings Types

Test Name

Status

Duration

Base Setting

✅

2ms

Create Setting From Dict

✅

7ms

Create Setting From Dict Fail

✅

2ms

Spin Int

✅

9ms

Spin Float

✅

5ms

Check Box

✅

3ms

Combo

✅

4ms

Browse File

✅

4ms

File List

✅

6ms

Check Range Int

✅

6ms

Check Range Float

✅

5ms

Button

✅

2ms

Tools Fileio

Test Name

Status

Duration

Add Extension

✅

1ms

Add Suffix

✅

1ms

Get Timestamp For Files

✅

1ms

Get Last File

✅

3ms

Extract Suffix

✅

1ms

Load Dll

✅

2ms

Save Json

✅

2ms

Open Json

✅

1ms

Open Json Bad File

✅

1ms

Save Tif

✅

5ms

Save Tif 2D

✅

4ms

Save Tif Bad Stack

✅

1ms

Open Tif

✅

17ms

Open Tif Bad File

✅

1ms

Save Png

✅

9ms

Save Png Color

✅

15ms

Save Png Bad Sample

✅

1ms

Open Calibration Mat Bad File

✅

1ms

Open Calibration Mat

✅

5ms
Log Test : Get Timestamp For Files 
Timestamp with hour : 20260403_074534
Timestamp without hour : 20260403
Log Test : Get Last File 
D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\File-03.txt
D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\File-03.txt
Log Test : Load Dll 
Unable to load the DLL 'PALMTracer_File.dll':
        Could not find module 'D:\a\palm-tracer\palm-tracer\palm_tracer\DLL\PALMTracer_File.dll' (or one of its dependencies). Try using the full path with constructor syntax.

Tools Filemigrator

Test Name

Status

Duration

Open

✅

6ms

Update Meta

✅

5ms

Open Old File

✅

6ms

Open Old Irregular File

✅

4ms

Column Migrator

✅

4ms

Analyze

✅

4ms

Migrate

✅

327ms
Log Test : Analyze 
.

Tools Logger

Test Name

Status

Duration

Logger

✅

9ms

Logger Bad Use

✅

3ms

Logger With Use

✅

3ms

Tools Monitoring

Test Name

Status

Duration

Monitoring

✅

1.23s

Monitoring Save

✅

7.08s
Log Test : Monitoring 
6 entrées.
Timestamps : [0.0, 0.22, 0.44, 0.65, 0.86, 1.01]
CPU Usage : [3.575, 0.0, 0.0, 4.15, 0.0, 0.0]
GPU Usage : [0, 0, 0, 0, 0, 0]
Memory Usage : [533.10546875, 533.10546875, 533.10546875, 533.10546875, 533.10546875, 533.078125]
Disk Usage : [0, 0.0, 0.0, 0.0, 0.0, 0.0]
Log Test : Monitoring Save 
Simulating high CPU usage for 2 seconds...
CPU simulation complete.
Allocating 50 MB of memory...
Memory allocated. Holding for 2 seconds...
Releasing memory.
Writing a file of size 1 MB...
File written. Holding for 2 seconds...
Deleting the file...
Disk I/O simulation complete.
Kaleido doesn't work so well need update. No Image Saved.

Tools Ui

Test Name

Status

Duration

Builders

✅

4ms

Builders Spin

✅

3ms

Print Error

✅

1ms

Print Warning

✅

1ms

Print Success

✅

1ms

Format Time

✅

2ms
Log Test : Print Error 
Message d'erreur
Log Test : Print Warning 
Message d'avertissement
Log Test : Print Success 
Message de succes

Ui Alignmentwidget

Test Name

Status

Duration

Widget Creation

✅

8ms

Bad Load Tif

✅

8ms

Bad Load Coef

✅

80ms

Bad Compute

✅

9ms

Compute

✅

14ms

Bad Align

✅

10ms

Align

✅

77ms

Ui Astigmatism3Dwidget

Test Name

Status

Duration

Widget Creation

✅

1.05s

Bad Load Loc

✅

266ms

Bad Load Model

✅

245ms

Bad Compute

✅

221ms

Compute

✅

574ms

Compute Remove Multi

✅

566ms

Compute Z

✅

539ms

Compute Center Z

✅

608ms

Bad Estimate

✅

373ms

Estimate

✅

434ms

Estimate Backup

✅

448ms

Sync Spin

✅

319ms

Download

✅

360ms
Log Test : Download 
D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref

Ui Baseplotlywidget

Test Name

Status

Duration

Creation

✅

72ms

Update Plotly

✅

100ms

Update Plotly No Js

✅

92ms

Download Plotly

✅

89ms

Export Plotly

✅

96ms
Log Test : Download Plotly 
D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\output
D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\output
Log Test : Export Plotly 
No figures to export.

Ui Filemigratorwidget

Test Name

Status

Duration

Widget Creation

✅

10ms

Bad Load

✅

13ms

Mirgate

✅

53ms

Ui Graphviewer

Test Name

Status

Duration

Widget Creation

✅

1.09s

Add Stack

✅

593ms

Actualize

✅

856ms

Reset Filtered

✅

576ms

Update Filtered

✅

711ms

Update Plot

✅

1.33s

Dual Source

✅

776ms

Get Plot Data

✅

1.63s

Tracks Source

✅

407ms
Log Test : Add Stack 
No valid settings file to load.

Ui Viewerhrwidget

Test Name

Status

Duration

Widget Creation

✅

3.06s

Add Stack

✅

2.67s

Change Source

✅

2.74s

Actualize

✅

2.60s

Reset Filtered

✅

2.74s

Update Filtered

✅

2.73s

Save

✅

2.28s

Generate

✅

2.18s

Generate Drift

✅

2.31s
Log Test : Save 
INFO: Image file saved successfully.

Ui Widget

Test Name

Status

Duration

Widget Creation

✅

2.08s

Widget On Load Setting

✅

2.14s

Widget Reset Setting

✅

2.09s

Widget Reset Layer

✅

2.98s

Widget Get Actual Image

✅

2.60s

Widget Add Detection Layers

✅

5.20s

Widget Preview

✅

2.92s

Widget Roi Filter Layer

✅

2.65s

Widget Auto Threshold

✅

2.38s

Widget Thread Process

✅

2.53s

Widget Keyblocker

✅

2.39s

Viewer3D

✅

2.58s
Log Test : Widget Get Actual Image 
INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.
Log Test : Widget Roi Filter Layer 
INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.
Log Test : Widget Thread Process 
INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.
INFO: Thread Process done.
[03-04-2026 07:46:47] Log opened : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer/log-20260403_074647.log
[03-04-2026 07:46:47] Start Processing.
[03-04-2026 07:46:47] Output folder: D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer
[03-04-2026 07:46:47] Settings saved.
[03-04-2026 07:46:47] Meta file saved.
[03-04-2026 07:46:47] Localization disabled.
[03-04-2026 07:46:47]  No pre-computed localization data.
[03-04-2026 07:46:47] Beads Extraction disabled.
[03-04-2026 07:46:47]         No pre-computed beads extraction data.
[03-04-2026 07:46:47] Tracking disabled.
[03-04-2026 07:46:47]     No pre-computed tracking data.
[03-04-2026 07:46:47] Blinking Reconnection disabled.
[03-04-2026 07:46:47] Tracks Computes disabled.
[03-04-2026 07:46:47]     No pre-computed tracks computes data.
[03-04-2026 07:46:47]  No pre-computed tracks computes data.
[03-04-2026 07:46:47]  No pre-computed tracks computes data.
[03-04-2026 07:46:47] High-resolution visualization disabled.
[03-04-2026 07:46:47] Graphical visualization disabled.
[03-04-2026 07:46:47] Gallery generation disabled.
[03-04-2026 07:46:47] Processing complete.
[03-04-2026 07:46:47] Log closed : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer/log-20260403_074647.log
INFO: Thread Process done.
Auto Threshold: 63.95
INFO: Thread Process done.
Log Test : Widget Keyblocker 
INFO: Loading the setting file 'C:\Users\runneradmin\.palm_tracer\settings.json'.
INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.
Log Test : Viewer3D 
WARNING: The file must contain the columns X, Y, Z, and Integrated Intensity.