Test Report Ci Windows-Latest 3.13

Environnement

Python	3.13.12
Platform	Windows-2025Server-10.0.26100-SP0
CI	true
System	Windows
CPU	AMD EPYC 7763 64-Core Processor (2.44 GHz - 2 Cores (4 Logical))
RAM	15.99 GB
GPU	Error detecting GPU: NVML Shared Library Not Found

Summary

240 tests collected, 240 passed ✅, 0 failed ❌, 0 skipped ⏭️ in 0:01:45s on 03/04/2026 at 07:46:30

Monitoring

Test Cases

Palmtracer

Test Name	Status	Duration
Reset Result	✅	70ms
Getter Localization	✅	51ms
Getter Beads	✅	47ms
Getter Tracks	✅	50ms
Getter Tracks Compute	✅	51ms
Get Status	✅	49ms
Getter Path	✅	47ms
Getter Stack	✅	47ms
Getter Suffix	✅	69ms
Load Bad Dll	✅	49ms
Load Nothing	✅	50ms
Load	✅	120ms
Process No Input	✅	56ms
Process Nothing	✅	192ms
Process Bad Dll	✅	52ms
Process Multiple Stack	✅	95ms
Process Only Localization	✅	91ms
Process Only Localization Spline Bad	✅	65ms
Process Only Localization Spline	✅	339ms
Process Only Beads Extraction No Beads	✅	92ms
Process Plane Discontinuous	✅	55ms
Process Only Beads Extraction	✅	93ms
Process Only Tracking	✅	376ms
Process Only Tracking Blinking	✅	84ms
Process Only Tracks Compute	✅	128ms
Process Only Visualization Hr	✅	263ms
Process Only Visualization Graph	✅	5.36s
Process Only Gallery	✅	84ms
Process All	✅	5.45s
Reset Filtered	✅	52ms
Update Filtered	✅	87ms
Save Filtered	✅	60ms
Filter Plan	✅	84ms
Filter All Localization	✅	129ms
Filter All Tracking	✅	108ms
Filter All Tracks Compute	✅	177ms
Filter Outside	✅	56ms
Add Color	✅	73ms

Log Test : Update Filtered

[03-04-2026 07:45:00] Log opened : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer/log-20260403_074500.log
[03-04-2026 07:45:00] Start Processing.
[03-04-2026 07:45:00] Output folder: D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer
[03-04-2026 07:45:00] Settings saved.
[03-04-2026 07:45:00] Meta file saved.
[03-04-2026 07:45:00] Localization disabled.
[03-04-2026 07:45:00]    Loading a pre-computed localization file.
[03-04-2026 07:45:00]      File 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer\localizations-20260403_074500.csv' loaded successfully, 451 localization(s) found.
[03-04-2026 07:45:00] Beads Extraction disabled.
[03-04-2026 07:45:00]   No pre-computed beads extraction data.
[03-04-2026 07:45:00] Tracking disabled.
[03-04-2026 07:45:00]     No pre-computed tracking data.
[03-04-2026 07:45:00] Blinking Reconnection disabled.
[03-04-2026 07:45:00] Tracks Computes disabled.
[03-04-2026 07:45:00]     No pre-computed tracks computes data.
[03-04-2026 07:45:00]  No pre-computed tracks computes data.
[03-04-2026 07:45:00]  No pre-computed tracks computes data.
[03-04-2026 07:45:00] High-resolution visualization disabled.
[03-04-2026 07:45:00] Graphical visualization disabled.
[03-04-2026 07:45:00] Gallery generation disabled.
[03-04-2026 07:45:00] Processing complete.
[03-04-2026 07:45:00] Log closed : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer/log-20260403_074500.log

Processing Astigmatism3D

Test Name	Status	Duration
Get Z From Planes	✅	2ms
Get Z From Step	✅	1ms
Remove Multi Loc	✅	15ms
Sigma Model	✅	1ms
Model Validity	✅	3ms
Model Projection Validity	✅	17ms

Log Test : Remove Multi Loc

Not all valid columns in localizations. Unable to remove ambiguous localizations reliably.
All planes contain multiple localizations. Unable to remove ambiguous localizations reliably.

Processing Drift

Test Name	Status	Duration
Extract Bead Bad Input	✅	6ms
Extract Beads No Match Returns Empty	✅	5ms
Assign Tracks No Pairs	✅	1ms
Assign Tracks Skip Used Track	✅	1ms
Extract Beads	✅	86ms
Remove Beads	✅	11ms
Get Drift Bad Input	✅	6ms
Get Drift	✅	30ms
Apply Drift Bad Input	✅	2ms
Apply Drift	✅	25ms
Chain Drift	✅	30ms
Drift Correction	✅	40ms

Processing Gallery

Test Name	Status	Duration
Make Gallery	✅	8ms

Processing Grapher

Test Name	Status	Duration
Blank	✅	266ms
Histogram	✅	726ms
Scatter	✅	448ms
Cloud	✅	1.53s
Astigmatism3D Curve	✅	81ms

Processing Palm

Test Name	Status	Duration
Palm Dll Valid	✅	2ms
Palm Cpu Empty Result	✅	5ms
Palm Cpu Image	✅	978ms
Palm Cpu Stack	✅	5.23s
Palm Cpu Stack Plane Selection	✅	297ms
Palm Cpu Stack Dll Check Quadrant	✅	381ms
Cpu Auto Threshold	✅	53ms
Tracking	✅	8.78s
Blinking Reconnection	✅	294ms
Tracks Compute	✅	71ms
Align	✅	161ms
Wavelett	✅	50ms
Astigmatism 3D Calibration	✅	10ms
Astigmatism 3D Estimation	✅	4ms

Log Test : Palm Cpu Image

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_0_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_1_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_2_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_3_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)

Log Test : Palm Cpu Stack

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_0_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_1_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_2_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_3_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_0_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_1_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_2_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_3_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_4_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)

Log Test : Palm Cpu Stack Plane Selection

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-plane_select-103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 227 Points comparés, 227 Points identiques (100.00%)

Log Test : Palm Cpu Stack Dll Check Quadrant

Comparaison terminée : 269 Points comparés, 269 Points identiques (100.00%)

Log Test : Tracking

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_0_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 224 Points comparés, 224 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_1_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 223 Points comparés, 223 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_2_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 225 Points comparés, 225 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_3_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 222 Points comparés, 222 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_4_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 222 Points comparés, 222 Points identiques (100.00%)
Fichier de localisations 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_5_1.0_0.0_7.csv' indisponible.
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_0_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 214 Points comparés, 214 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_1_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 212 Points comparés, 212 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_2_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 217 Points comparés, 217 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_3_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 211 Points comparés, 211 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_4_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 214 Points comparés, 214 Points identiques (100.00%)
Fichier de localisations 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_5_1.0_0.0_7.csv' indisponible.

Log Test : Blinking Reconnection

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking-blinking-0.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking-blinking-1.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking-blinking-2.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)

Log Test : Tracks Compute

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-MSD-True.csv'
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-True.csv'
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-MSD-False.csv'
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-False.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-1.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-2.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-3.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering

Processing Parsing

Test Name	Status	Duration
Get Meta	✅	3ms
Rearrange Dataframe Columns	✅	4ms
Log10 Dataframe	✅	4ms
Parse Irregular Array	✅	2ms
Parse Result	✅	22ms
Parse Localization For Tracking	✅	6ms

Processing Renderer

Test Name	Status	Duration
Set Size	✅	1ms
Get Localization Colors	✅	9ms
Get Tracks Colors	✅	35ms
Draw Line	✅	2ms
Localizations	✅	1ms
Tracks	✅	2ms

Processing Visualization

Test Name	Status	Duration
Normalize Data	✅	1ms
Render Hr Image	✅	21ms
Render Hr Image Bad Input	✅	2ms
Render Tracks Image	✅	21ms
Render Tracks Image Bad Input	✅	7ms
Render Roi	✅	48ms
Render Roi Bad Input	✅	2ms
Plot Histogram	✅	1.23s
Plot Histogram Bad Input	✅	192ms
Plot Violin	✅	947ms
Plot Violin Bad Input	✅	98ms
Plot Heatmap	✅	527ms
Plot Heatmap Bad Input	✅	96ms

Settings Groups

Test Name	Status	Duration
Base Group	✅	2ms
Batch	✅	76ms
Batch Get Path	✅	4ms
Batch Get Stacks	✅	16ms
Calibration	✅	7ms
Localization	✅	21ms
Gaussian Fit	✅	7ms
Spline Fit	✅	5ms
Beads	✅	4ms
Tracking	✅	4ms
Tracks Blinking Reconnection	✅	6ms
Tracks Computes	✅	7ms
Gallery	✅	5ms
Visualization Hr	✅	11ms
Visualization Graph	✅	5ms
Filtering	✅	55ms
Filtering L	✅	31ms
Filtering T	✅	19ms

Log Test : Batch

- Activate : True
- Files : -1
- Mode : 0

{'Files': -1, 'Mode': 0}

Log Test : Batch Get Stacks

Error when concatenating stacks (they will be processed independently):
ValueError: all the input array dimensions except for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 128 and the array at index 1 has size 256

Log Test : Calibration

- Activate : True
- Pixel Size : 0.32
- Exposure : 0.05
- Intensity : 0.012

{'Pixel Size': 0.32, 'Exposure': 0.05, 'Intensity': 0.012}

Log Test : Localization

- Activate : True
- Preview : True
- Threshold : 90.0
- Auto Threshold : True
- ROI Shape : 0
- ROI Size : 7
- Watershed : True
- Fit : 0
- Gaussian Fit :
  - Activate : True
  - Mode : 0
  - Sigma : 1.0
  - Theta : 0.0
- Spline Fit :
  - Activate : True
  - Sensor : 0
  - Variance Map : 
  - File : 

{'Preview': True, 'Threshold': 90.0, 'Auto Threshold': True, 'ROI Shape': 0, 'ROI Size': 7, 'Watershed': True, 'Fit': 0, 'Gaussian Fit Mode': 0, 'Gaussian Fit Sigma': 1.0, 'Gaussian Fit Theta': 0.0, 'Spline Fit Sensor': 0, 'Spline Fit Variance Map': '', 'Spline Fit File': ''}

Log Test : Gaussian Fit

- Activate : True
- Mode : 2
- Sigma : 1.0
- Theta : 0.0

{'Mode': 2, 'Sigma': 1.0, 'Theta': 0.0}

Log Test : Spline Fit

- Activate : True
- Sensor : 1
- Variance Map : 
- File : 

{'Sensor': 1, 'Variance Map': '', 'File': ''}

Log Test : Beads

- Activate : True
- Max Distance : 2.0
- 3D : False

{'Max Distance': 2.0, '3D': False}

Log Test : Tracking

- Activate : True
- Max Distance : 2.0

{'Max Distance': 2.0}

Log Test : Tracks Blinking Reconnection

- Activate : True
- Mode : 1
- Max Duration : 1
- Max Distance : 1.0

{'Mode': 1, 'Max Duration': 1, 'Max Distance': 1.0}

Log Test : Tracks Computes

- Activate : True
- MSD : True
- Instant Diffusion : False
- Fit Length : 4
- 3D : False
- Log Scale : False
- Fit : 0

{'MSD': True, 'Instant Diffusion': False, 'Fit Length': 4, '3D': False, 'Log Scale': False, 'Fit': 0}

Log Test : Gallery

- Activate : True
- ROI Size : 11
- ROIs Per Line : 30

{'ROI Size': 11, 'ROIs Per Line': 30}

Log Test : Visualization Hr

- Activate : True
- Ratio : 1
- Type : 0
- Source L : 1
- Source T : 1

{'Ratio': 1, 'Type': 0, 'Source L': 1, 'Source T': 1}

Log Test : Visualization Graph

- Activate : True
- Mode : 1
- Source : 0

{'Mode': 1, 'Source': 0}

Log Test : Filtering

FilteringL id: 2418371494112
X id: 2418271481936
limits id 2418371710080
- Activate : True
- Save : True
- Plane : [1, 100000]
- Localization :
  - Activate : True
  - X : [0, 100000]
  - Y : [0, 100000]
  - Z : [-1000, 1000]
  - Intensity : [0, 10000000]
  - Sigma X : [0.0, 10.0]
  - Sigma Y : [0.0, 10.0]
  - Circularity : [0.0, 1.0]
  - Theta : [-180.0, 180.0]
  - MSE XY : [0.0, 1.0]
  - MSE Z : [0.0, 1.0]
- Tracks :
  - Activate : True
  - Length : [1, 10000]
  - Instant D : [-5.0, 5.0]
  - D Coeff : [-5.0, 5.0]
  - Alpha : [-10.0, 10.0]
  - Speed : [0.0, 1.0]
  - Confinement : [-10.0, 10.0]

{'Save': True, 'Plane': [1, 100000], 'Localization X': [0, 100000], 'Localization Y': [0, 100000], 'Localization Z': [-1000, 1000], 'Localization Intensity': [0, 10000000], 'Localization Sigma X': [0.0, 10.0], 'Localization Sigma Y': [0.0, 10.0], 'Localization Circularity': [0.0, 1.0], 'Localization Theta': [-180.0, 180.0], 'Localization MSE XY': [0.0, 1.0], 'Localization MSE Z': [0.0, 1.0], 'Tracks Length': [1, 10000], 'Tracks Instant D': [-5.0, 5.0], 'Tracks D Coeff': [-5.0, 5.0], 'Tracks Alpha': [-10.0, 10.0], 'Tracks Speed': [0.0, 1.0], 'Tracks Confinement': [-10.0, 10.0]}

Log Test : Filtering L

FilteringL id: 2418371494112
X id: 2418262018000
limits id 2418395599488
- Activate : True
- X : [2, 9]
- Y : [0, 100000]
- Z : [-1000, 1000]
- Intensity : [0, 10000000]
- Sigma X : [0.0, 10.0]
- Sigma Y : [0.0, 10.0]
- Circularity : [0.0, 1.0]
- Theta : [-180.0, 180.0]
- MSE XY : [0.0, 1.0]
- MSE Z : [0.0, 1.0]

{'X': [2, 9], 'Y': [0, 100000], 'Z': [-1000, 1000], 'Intensity': [0, 10000000], 'Sigma X': [0.0, 10.0], 'Sigma Y': [0.0, 10.0], 'Circularity': [0.0, 1.0], 'Theta': [-180.0, 180.0], 'MSE XY': [0.0, 1.0], 'MSE Z': [0.0, 1.0]}

Log Test : Filtering T

- Activate : True
- Length : [2, 3]
- Instant D : [-5.0, 5.0]
- D Coeff : [-5.0, 5.0]
- Alpha : [-10.0, 10.0]
- Speed : [0.0, 1.0]
- Confinement : [-10.0, 10.0]

{'Length': [2, 3], 'Instant D': [-5.0, 5.0], 'D Coeff': [-5.0, 5.0], 'Alpha': [-10.0, 10.0], 'Speed': [0.0, 1.0], 'Confinement': [-10.0, 10.0]}

Settings Settings

Test Name	Status	Duration
Settings	✅	111ms
Settings Group Getter	✅	47ms
Settings Signal	✅	57ms

Settings Signal

Test Name	Status	Duration
Connect And Emit Direct	✅	1ms
Disconnect	✅	1ms
Block Simple Coalescence Last Value	✅	1ms
Block Without Emits No Output	✅	1ms
Nested Blocks Emit Once At Outer Exit	✅	1ms
Emit Default None Coalesced	✅	1ms
Block Flags Reset After Flush	✅	1ms
Blocked Returns Context Manager Instance	✅	1ms
Internal Block Begin End Paths	✅	1ms
Coalescence Overwrite Multiple Times	✅	1ms
Emit Direct After Previous Block	✅	1ms

Settings Types

Test Name	Status	Duration
Base Setting	✅	2ms
Create Setting From Dict	✅	6ms
Create Setting From Dict Fail	✅	1ms
Spin Int	✅	4ms
Spin Float	✅	3ms
Check Box	✅	3ms
Combo	✅	3ms
Browse File	✅	3ms
File List	✅	4ms
Check Range Int	✅	6ms
Check Range Float	✅	8ms
Button	✅	2ms

Tools Fileio

Test Name	Status	Duration
Add Extension	✅	1ms
Add Suffix	✅	1ms
Get Timestamp For Files	✅	1ms
Get Last File	✅	2ms
Extract Suffix	✅	1ms
Load Dll	✅	2ms
Save Json	✅	2ms
Open Json	✅	1ms
Open Json Bad File	✅	1ms
Save Tif	✅	4ms
Save Tif 2D	✅	3ms
Save Tif Bad Stack	✅	1ms
Open Tif	✅	9ms
Open Tif Bad File	✅	1ms
Save Png	✅	7ms
Save Png Color	✅	11ms
Save Png Bad Sample	✅	1ms
Open Calibration Mat Bad File	✅	1ms
Open Calibration Mat	✅	3ms

Log Test : Get Timestamp For Files

Timestamp with hour : 20260403_074525
Timestamp without hour : 20260403

Log Test : Get Last File

D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\File-03.txt
D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\File-03.txt

Log Test : Load Dll

Unable to load the DLL 'PALMTracer_File.dll':
        Could not find module 'D:\a\palm-tracer\palm-tracer\palm_tracer\DLL\PALMTracer_File.dll' (or one of its dependencies). Try using the full path with constructor syntax.

Tools Filemigrator

Test Name	Status	Duration
Open	✅	4ms
Update Meta	✅	5ms
Open Old File	✅	6ms
Open Old Irregular File	✅	4ms
Column Migrator	✅	3ms
Analyze	✅	4ms
Migrate	✅	351ms

Log Test : Analyze

.

Tools Logger

Test Name	Status	Duration
Logger	✅	6ms
Logger Bad Use	✅	2ms
Logger With Use	✅	3ms

Tools Monitoring

Test Name	Status	Duration
Monitoring	✅	1.21s
Monitoring Save	✅	6.81s

Log Test : Monitoring

6 entrées.
Timestamps : [0.0, 0.2, 0.41, 0.61, 0.81, 1.0]
CPU Usage : [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
GPU Usage : [0, 0, 0, 0, 0, 0]
Memory Usage : [533.58984375, 533.58984375, 533.58984375, 533.58984375, 533.58984375, 533.56640625]
Disk Usage : [0, 0.0, 0.0, 0.0, 0.0, 0.0]

Log Test : Monitoring Save

Simulating high CPU usage for 2 seconds...
CPU simulation complete.
Allocating 50 MB of memory...
Memory allocated. Holding for 2 seconds...
Releasing memory.
Writing a file of size 1 MB...
File written. Holding for 2 seconds...
Deleting the file...
Disk I/O simulation complete.
Kaleido doesn't work so well need update. No Image Saved.

Tools Ui

Test Name	Status	Duration
Builders	✅	3ms
Builders Spin	✅	2ms
Print Error	✅	1ms
Print Warning	✅	1ms
Print Success	✅	1ms
Format Time	✅	1ms

Log Test : Print Error

Message d'erreur

Log Test : Print Warning

Message d'avertissement

Log Test : Print Success

Message de succes

Ui Alignmentwidget

Test Name	Status	Duration
Widget Creation	✅	6ms
Bad Load Tif	✅	6ms
Bad Load Coef	✅	9ms
Bad Compute	✅	6ms
Compute	✅	7ms
Bad Align	✅	8ms
Align	✅	62ms

Ui Astigmatism3Dwidget

Test Name	Status	Duration
Widget Creation	✅	5.59s
Bad Load Loc	✅	186ms
Bad Load Model	✅	162ms
Bad Compute	✅	159ms
Compute	✅	413ms
Compute Remove Multi	✅	469ms
Compute Z	✅	446ms
Compute Center Z	✅	476ms
Bad Estimate	✅	260ms
Estimate	✅	306ms
Estimate Backup	✅	310ms
Sync Spin	✅	214ms
Download	✅	239ms

Log Test : Download

D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref

Ui Baseplotlywidget

Test Name	Status	Duration
Creation	✅	50ms
Update Plotly	✅	61ms
Update Plotly No Js	✅	63ms
Download Plotly	✅	61ms
Export Plotly	✅	63ms

Log Test : Download Plotly

D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\output
D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\output

Log Test : Export Plotly

No figures to export.

Ui Filemigratorwidget

Test Name	Status	Duration
Widget Creation	✅	7ms
Bad Load	✅	7ms
Mirgate	✅	38ms

Ui Graphviewer

Test Name	Status	Duration
Widget Creation	✅	308ms
Add Stack	✅	428ms
Actualize	✅	616ms
Reset Filtered	✅	407ms
Update Filtered	✅	520ms
Update Plot	✅	967ms
Dual Source	✅	529ms
Get Plot Data	✅	1.16s
Tracks Source	✅	304ms

Log Test : Add Stack

No valid settings file to load.

Ui Viewerhrwidget

Test Name	Status	Duration
Widget Creation	✅	2.01s
Add Stack	✅	1.55s
Change Source	✅	1.55s
Actualize	✅	1.55s
Reset Filtered	✅	1.56s
Update Filtered	✅	1.72s
Save	✅	1.62s
Generate	✅	1.62s
Generate Drift	✅	1.67s

Log Test : Save

INFO: Image file saved successfully.

Ui Widget

Test Name	Status	Duration
Widget Creation	✅	1.54s
Widget On Load Setting	✅	1.55s
Widget Reset Setting	✅	1.56s
Widget Reset Layer	✅	2.19s
Widget Get Actual Image	✅	1.81s
Widget Add Detection Layers	✅	4.67s
Widget Preview	✅	2.41s
Widget Roi Filter Layer	✅	2.08s
Widget Auto Threshold	✅	1.86s
Widget Thread Process	✅	1.89s
Widget Keyblocker	✅	1.86s
Viewer3D	✅	2.05s

Log Test : Widget Get Actual Image

INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.

Log Test : Widget Roi Filter Layer

INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.

Log Test : Widget Thread Process

INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.
INFO: Thread Process done.
[03-04-2026 07:46:24] Log opened : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer/log-20260403_074624.log
[03-04-2026 07:46:24] Start Processing.
[03-04-2026 07:46:24] Output folder: D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer
[03-04-2026 07:46:24] Settings saved.
[03-04-2026 07:46:24] Meta file saved.
[03-04-2026 07:46:24] Localization disabled.
[03-04-2026 07:46:24]  No pre-computed localization data.
[03-04-2026 07:46:24] Beads Extraction disabled.
[03-04-2026 07:46:24]         No pre-computed beads extraction data.
[03-04-2026 07:46:24] Tracking disabled.
[03-04-2026 07:46:24]     No pre-computed tracking data.
[03-04-2026 07:46:24] Blinking Reconnection disabled.
[03-04-2026 07:46:24] Tracks Computes disabled.
[03-04-2026 07:46:24]     No pre-computed tracks computes data.
[03-04-2026 07:46:24]  No pre-computed tracks computes data.
[03-04-2026 07:46:24]  No pre-computed tracks computes data.
[03-04-2026 07:46:24] High-resolution visualization disabled.
[03-04-2026 07:46:24] Graphical visualization disabled.
[03-04-2026 07:46:24] Gallery generation disabled.
[03-04-2026 07:46:24] Processing complete.
[03-04-2026 07:46:24] Log closed : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer/log-20260403_074624.log
INFO: Thread Process done.
Auto Threshold: 63.95
INFO: Thread Process done.

Log Test : Widget Keyblocker

INFO: Loading the setting file 'C:\Users\runneradmin\.palm_tracer\settings.json'.
INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.

Log Test : Viewer3D

WARNING: The file must contain the columns X, Y, Z, and Integrated Intensity.