Test Report Ci Windows-Latest 3.13

Environnement

Python	3.13.13
Platform	Windows-2025Server-10.0.26100-SP0
CI	true
System	Windows
CPU	AMD EPYC 7763 64-Core Processor (2.44 GHz - 2 Cores (4 Logical))
RAM	15.99 GB
GPU	Error detecting GPU: NVML Shared Library Not Found

Summary

263 tests collected, 263 passed ✅, 0 failed ❌, 0 skipped ⏭️ in 0:01:56s on 04/05/2026 at 13:58:09

Monitoring

Test Cases

Palmtracer

Test Name	Status	Duration
Reset Result	✅	69ms
Getter Localization	✅	57ms
Getter Beads	✅	53ms
Getter Tracks	✅	56ms
Getter Tracks Compute	✅	53ms
Get Status	✅	54ms
Getter Path	✅	52ms
Getter Stack	✅	53ms
Getter Suffix	✅	56ms
Load Bad Dll	✅	59ms
Load Nothing	✅	54ms
Load	✅	121ms
Process No Input	✅	51ms
Process Nothing	✅	236ms
Process Bad Dll	✅	49ms
Process Multiple Stack	✅	96ms
Process Localization	✅	89ms
Process Localization Z	✅	199ms
Process Localization Spline Bad	✅	69ms
Process Localization Spline	✅	108ms
Process Beads Extraction No Beads	✅	107ms
Process Plane Discontinuous	✅	59ms
Process Beads Extraction	✅	159ms
Process Tracking	✅	426ms
Process Tracking Blinking	✅	142ms
Process Tracks Compute	✅	2.38s
Process Gallery	✅	148ms
Process Visualization Graph	✅	5.61s
Process Visualization Hr	✅	1.39s
Process All	✅	5.68s
Reset Filtered	✅	54ms
Update Filtered	✅	140ms
Save Filtered	✅	64ms
Filter Localization	✅	1.24s
Filter Tracks Compute	✅	2.36s
Add Color	✅	75ms
Get Astigmatism Model	✅	66ms

Log Test : Update Filtered

[04-05-2026 13:56:33] Log opened : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer\log-20260504_135633.log
[04-05-2026 13:56:33] Start Processing.
[04-05-2026 13:56:33] Output folder: D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer
[04-05-2026 13:56:33] Meta file saved.
[04-05-2026 13:56:33] Settings saved.
[04-05-2026 13:56:33] Localization load previous result (Timestamp : 20260101_000000).
[04-05-2026 13:56:33]  File 'localizations-20260101_000000.csv' loaded successfully, 451 row(s) found.
[04-05-2026 13:56:33] Beads Extraction disabled.
[04-05-2026 13:56:33] Tracking disabled.
[04-05-2026 13:56:33] Blinking Reconnection disabled.
[04-05-2026 13:56:33] Tracks Compute disabled.
[04-05-2026 13:56:33] Gallery generation disabled.
[04-05-2026 13:56:33] Graphical visualization disabled.
[04-05-2026 13:56:33] High-resolution visualization disabled.
[04-05-2026 13:56:33] Processing complete.
[04-05-2026 13:56:33] Log closed : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer\log-20260504_135633.log

Processing Astigmatism3D

Test Name	Status	Duration
Get Z From Planes	✅	1ms
Get Z From Step	✅	1ms
Remove Multi Loc	✅	14ms
Sigma Model	✅	1ms
Model Validity	✅	3ms
Model Projection Validity	✅	17ms
Find Model Center	✅	3ms

Log Test : Remove Multi Loc

Not all valid columns in localizations. Unable to remove ambiguous localizations reliably.
All planes contain multiple localizations. Unable to remove ambiguous localizations reliably.

Log Test : Model Projection Validity

{'rmse_z': 5.777646505663858, 'mae_z': 4.527265453090619, 'p95_abs_z': 11.402280456091262, 'bias_z': 0.034926985397079696, 'std_z': 5.777540934524036, 'mean_dist': 0.015979049334594875, 'p95_dist': 0.03907161488826703, 'slope_mean': 0.003993454737472619}
{'rmse_z': 577.3147040352493, 'mae_z': 499.9443888777755, 'p95_abs_z': 950.0000000000001, 'bias_z': 7.395319063812727, 'std_z': 577.2673356004581, 'mean_dist': 0.02749131099862401, 'p95_dist': 0.09899871427527444, 'slope_mean': 0.003993454737472619}
{'rmse_z': 763.5196346175319, 'mae_z': 749.5955591118224, 'p95_abs_z': 975.0050010002001, 'bias_z': 20.59999999999995, 'std_z': 763.2416867850505, 'mean_dist': 1.592075248599287, 'p95_dist': 2.2654090960555444, 'slope_mean': 0.00156321987547227}

Processing Drift

Test Name	Status	Duration
Extract Bead Bad Input	✅	14ms
Extract Beads No Match Returns Empty	✅	6ms
Assign Tracks No Pairs	✅	1ms
Assign Tracks Skip Used Track	✅	1ms
Extract Beads	✅	89ms
Remove Beads	✅	12ms
Get Drift Bad Input	✅	7ms
Get Drift	✅	34ms
Apply Drift Bad Input	✅	2ms
Remove Drift	✅	22ms
Chain Drift	✅	29ms
Drift Correction	✅	40ms
Median Filter Centered	✅	6ms

Processing Filtering

Test Name	Status	Duration
Filter Bad	✅	31ms
Localization	✅	53ms
Tracking	✅	35ms
Tracks Compute	✅	52ms

Processing Gallery

Test Name	Status	Duration
Make Gallery	✅	9ms

Processing Grapher

Test Name	Status	Duration
Blank	✅	302ms
Histogram	✅	1.02s
Scatter	✅	450ms
Cloud	✅	1.54s
Astigmatism3D	✅	438ms

Processing Palm

Test Name	Status	Duration
Palm Dll Valid	✅	2ms
Palm Cpu Empty Result	✅	6ms
Palm Cpu Image	✅	1.03s
Palm Cpu Stack	✅	5.43s
Palm Cpu Stack Plane Selection	✅	302ms
Palm Cpu Stack Dll Check Quadrant	✅	392ms
Cpu Auto Threshold	✅	52ms
Tracking	✅	8.66s
Blinking Reconnection	✅	288ms
Tracks Compute	✅	74ms
Align	✅	166ms
Wavelett	✅	52ms
Astigmatism 3D Calibration	✅	11ms
Astigmatism 3D Estimation	✅	6ms

Log Test : Palm Cpu Image

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_0_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_1_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_2_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_3_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Theta mean: 4.11°, Theta median (robust) : 0.52°, Concentration R: 0.923
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-0_103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Theta mean: -5.05°, Theta median (robust) : -1.63°, Concentration R: 0.892
Theta mean: -7.82°, Theta median (robust) : -0.76°, Concentration R: 0.858
Theta mean: 3.99°, Theta median (robust) : -0.59°, Concentration R: 0.900
Theta mean: 1.57°, Theta median (robust) : -0.23°, Concentration R: 0.851
Theta mean: -0.87°, Theta median (robust) : 0.07°, Concentration R: 0.848
Theta mean: -1.38°, Theta median (robust) : 0.78°, Concentration R: 0.933
Theta mean: 3.27°, Theta median (robust) : 0.13°, Concentration R: 0.813
Theta mean: 1.46°, Theta median (robust) : 0.43°, Concentration R: 0.917
Theta mean: 0.58°, Theta median (robust) : 0.03°, Concentration R: 0.896

Log Test : Palm Cpu Stack

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_0_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_1_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_2_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_3_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Theta mean: 0.04°, Theta median (robust) : 0.07°, Concentration R: 0.884
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_0_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_1_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_2_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_3_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Theta mean: -0.33°, Theta median (robust) : -0.04°, Concentration R: 0.887
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_4_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)

Log Test : Palm Cpu Stack Plane Selection

Theta mean: -0.53°, Theta median (robust) : -0.05°, Concentration R: 0.876
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-plane_select-103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 227 Points comparés, 227 Points identiques (100.00%)

Log Test : Palm Cpu Stack Dll Check Quadrant

Theta mean: -1.19°, Theta median (robust) : -0.02°, Concentration R: 0.868
Comparaison terminée : 269 Points comparés, 269 Points identiques (100.00%)

Log Test : Tracking

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_0_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 224 Points comparés, 224 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_1_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 223 Points comparés, 223 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_2_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 225 Points comparés, 225 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_3_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 222 Points comparés, 222 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_True_4_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 222 Points comparés, 222 Points identiques (100.00%)
Fichier de localisations 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_True_5_1.0_0.0_7.csv' indisponible.
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_0_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 214 Points comparés, 214 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_1_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 212 Points comparés, 212 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_2_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 217 Points comparés, 217 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_3_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 211 Points comparés, 211 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-tracking-103.6_False_4_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 214 Points comparés, 214 Points identiques (100.00%)
Fichier de localisations 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\stack-localizations-103.6_False_5_1.0_0.0_7.csv' indisponible.

Log Test : Blinking Reconnection

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking-blinking-0.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking-blinking-1.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking-blinking-2.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)

Log Test : Tracks Compute

Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-MSD-True.csv'
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-True.csv'
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-MSD-False.csv'
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-False.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-1.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-2.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref\tracking2-Fit-3.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering

Processing Parsing

Test Name	Status	Duration
Get Meta	✅	3ms
Rearrange Dataframe Columns	✅	4ms
Log10 Dataframe	✅	4ms
Degrees To Radians	✅	1ms
Radians To Degrees	✅	1ms
Wrap Angle	✅	1ms
Manage Theta	✅	1ms
Parse Irregular Array	✅	2ms
Parse Result	✅	22ms
Parse Localization For Tracking	✅	5ms

Log Test : Manage Theta

Theta mean: -16.32°, Theta median (robust) : 0.00°, Concentration R: 0.712

Processing Renderer

Test Name	Status	Duration
Set Size	✅	1ms
Get Localization Colors	✅	6ms
Get Tracks Colors	✅	36ms
Draw Line	✅	2ms
Draw Gaussian	✅	2ms
Localizations	✅	2ms
Localizations Gaussian	✅	3ms
Tracks	✅	2ms

Processing Step

Test Name	Status	Duration
Object Creation	✅	1ms
Prepare Action	✅	23ms

Log Test : Object Creation

Step : Step(group_name='name', keys=['key'], process_func=<function test_object_creation.<locals>.f at 0x000001B8D9AA1B20>, filter_func=<function test_object_creation.<locals>.f at 0x000001B8D9AA1B20>, allow_dirty=False, apply_filter=True)
Actions : StepAction.Compute,StepAction.Reuse,StepAction.Skip

Processing Visualization

Test Name	Status	Duration
Normalize Data	✅	1ms
Render Hr Image	✅	23ms
Render Hr Image Bad Input	✅	2ms
Render Tracks Image	✅	21ms
Render Tracks Image Bad Input	✅	5ms
Render Roi	✅	49ms
Render Roi Bad Input	✅	2ms
Plot Histogram	✅	1.24s
Plot Histogram Bad Input	✅	187ms
Plot Violin	✅	946ms
Plot Violin Bad Input	✅	93ms
Plot Heatmap	✅	544ms
Plot Heatmap Bad Input	✅	92ms

Settings Groups

Test Name	Status	Duration
Base Group	✅	3ms
Batch	✅	168ms
Batch Get Path	✅	4ms
Batch Get Stacks	✅	15ms
Calibration	✅	7ms
Localization	✅	24ms
Gaussian Fit	✅	11ms
Spline Fit	✅	5ms
Beads	✅	5ms
Tracking	✅	4ms
Tracks Blinking Reconnection	✅	7ms
Tracks Computes	✅	7ms
Gallery	✅	7ms
Visualization Hr	✅	8ms
Visualization Graph	✅	5ms
Filters	✅	61ms
Filters L	✅	30ms
Filters T	✅	19ms

Log Test : Batch

- Activate : True
- Files : -1
- Mode : 0

{'Files': -1, 'Mode': 0}

Log Test : Batch Get Stacks

Error when concatenating stacks (they will be processed independently):
ValueError: all the input array dimensions except for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 128 and the array at index 1 has size 256

Log Test : Calibration

- Activate : True
- Pixel Size : 0.32
- Exposure : 0.05
- Intensity : 0.012

{'Pixel Size': 0.32, 'Exposure': 0.05, 'Intensity': 0.012}

Log Test : Localization

- Activate : True
- Preview : True
- Threshold : 90.0
- Auto Threshold : True
- ROI Shape : 0
- ROI Size : 7
- Watershed : True
- Fit : 0
- Gaussian Fit :
  - Activate : True
  - Mode : 0
  - Sigma : 1.0
  - Theta : 0.0
  - Z : False
  - Z max : 500
  - Model : 
- Spline Fit :
  - Activate : True
  - Sensor : 0
  - Variance Map : 
  - File : 

{'Preview': True, 'Threshold': 90.0, 'Auto Threshold': True, 'ROI Shape': 0, 'ROI Size': 7, 'Watershed': True, 'Fit': 0, 'Gaussian Fit Mode': 0, 'Gaussian Fit Sigma': 1.0, 'Gaussian Fit Theta': 0.0, 'Gaussian Fit Z': False, 'Gaussian Fit Z max': 500, 'Gaussian Fit Model': '', 'Spline Fit Sensor': 0, 'Spline Fit Variance Map': '', 'Spline Fit File': ''}

Log Test : Gaussian Fit

- Activate : True
- Mode : 2
- Sigma : 1.0
- Theta : 0.0
- Z : False
- Z max : 500
- Model : 

{'Mode': 2, 'Sigma': 1.0, 'Theta': 0.0, 'Z': False, 'Z max': 500, 'Model': ''}

Log Test : Spline Fit

- Activate : True
- Sensor : 1
- Variance Map : 
- File : 

{'Sensor': 1, 'Variance Map': '', 'File': ''}

Log Test : Beads

- Activate : True
- Max Distance : 2.0
- 3D : False

{'Max Distance': 2.0, '3D': False}

Log Test : Tracking

- Activate : True
- Max Distance : 2.0

{'Max Distance': 2.0}

Log Test : Tracks Blinking Reconnection

- Activate : True
- Mode : 1
- Max Duration : 1
- Max Distance : 1.0

{'Mode': 1, 'Max Duration': 1, 'Max Distance': 1.0}

Log Test : Tracks Computes

- Activate : True
- MSD : True
- Instant Diffusion : False
- Fit Length : 4
- 3D : False
- Log Scale : False
- Fit : 0

{'MSD': True, 'Instant Diffusion': False, 'Fit Length': 4, '3D': False, 'Log Scale': False, 'Fit': 0}

Log Test : Gallery

- Activate : True
- ROI Size : 11
- ROIs Per Line : 30

{'ROI Size': 11, 'ROIs Per Line': 30}

Log Test : Visualization Hr

- Activate : True
- Ratio : 1
- Type : 0
- Source L : 1
- Source T : 1

{'Ratio': 1, 'Type': 0, 'Source L': 1, 'Source T': 1}

Log Test : Visualization Graph

- Activate : True
- Mode : 1
- Source : 0

{'Mode': 1, 'Source': 0}

Log Test : Filters

- Activate : True
- Save : True
- Plane : [1, 100000]
- Localization :
  - Activate : True
  - X : [0, 100000]
  - Y : [0, 100000]
  - Z : [-2000, 2000]
  - Intensity : [0, 10000000]
  - Sigma X : [0.0, 10.0]
  - Sigma Y : [0.0, 10.0]
  - Circularity : [0.0, 1.0]
  - Theta : [-90.0, 90.0]
  - MSE XY : [0.0, 1.0]
  - MSE Z : [0.0, 1.0]
- Tracks :
  - Activate : True
  - Length : [1, 10000]
  - Instant D : [-5.0, 5.0]
  - D Coeff : [-5.0, 5.0]
  - Alpha : [-10.0, 10.0]
  - Speed : [0.0, 1.0]
  - Confinement : [-10.0, 10.0]

{'Save': True, 'Plane': [1, 100000], 'Localization X': [0, 100000], 'Localization Y': [0, 100000], 'Localization Z': [-2000, 2000], 'Localization Intensity': [0, 10000000], 'Localization Sigma X': [0.0, 10.0], 'Localization Sigma Y': [0.0, 10.0], 'Localization Circularity': [0.0, 1.0], 'Localization Theta': [-90.0, 90.0], 'Localization MSE XY': [0.0, 1.0], 'Localization MSE Z': [0.0, 1.0], 'Tracks Length': [1, 10000], 'Tracks Instant D': [-5.0, 5.0], 'Tracks D Coeff': [-5.0, 5.0], 'Tracks Alpha': [-10.0, 10.0], 'Tracks Speed': [0.0, 1.0], 'Tracks Confinement': [-10.0, 10.0]}

Log Test : Filters L

- Activate : True
- X : [2, 9]
- Y : [0, 100000]
- Z : [-2000, 2000]
- Intensity : [0, 10000000]
- Sigma X : [0.0, 10.0]
- Sigma Y : [0.0, 10.0]
- Circularity : [0.0, 1.0]
- Theta : [-90.0, 90.0]
- MSE XY : [0.0, 1.0]
- MSE Z : [0.0, 1.0]

{'X': [2, 9], 'Y': [0, 100000], 'Z': [-2000, 2000], 'Intensity': [0, 10000000], 'Sigma X': [0.0, 10.0], 'Sigma Y': [0.0, 10.0], 'Circularity': [0.0, 1.0], 'Theta': [-90.0, 90.0], 'MSE XY': [0.0, 1.0], 'MSE Z': [0.0, 1.0]}

Log Test : Filters T

- Activate : True
- Length : [2, 3]
- Instant D : [-5.0, 5.0]
- D Coeff : [-5.0, 5.0]
- Alpha : [-10.0, 10.0]
- Speed : [0.0, 1.0]
- Confinement : [-10.0, 10.0]

{'Length': [2, 3], 'Instant D': [-5.0, 5.0], 'D Coeff': [-5.0, 5.0], 'Alpha': [-10.0, 10.0], 'Speed': [0.0, 1.0], 'Confinement': [-10.0, 10.0]}

Settings Settings

Test Name	Status	Duration
Settings	✅	111ms
Settings Group Getter	✅	51ms
Settings Signal	✅	65ms

Settings Signal

Test Name	Status	Duration
Connect And Emit Direct	✅	1ms
Disconnect	✅	1ms
Block Simple Coalescence Last Value	✅	1ms
Block Without Emits No Output	✅	1ms
Nested Blocks Emit Once At Outer Exit	✅	1ms
Emit Default None Coalesced	✅	1ms
Block Flags Reset After Flush	✅	1ms
Blocked Returns Context Manager Instance	✅	1ms
Internal Block Begin End Paths	✅	1ms
Coalescence Overwrite Multiple Times	✅	1ms
Emit Direct After Previous Block	✅	1ms

Settings Types

Test Name	Status	Duration
Base Setting	✅	2ms
Create Setting From Dict	✅	6ms
Create Setting From Dict Fail	✅	1ms
Spin Int	✅	4ms
Spin Float	✅	3ms
Check Box	✅	3ms
Combo	✅	3ms
Browse File	✅	4ms
File List	✅	4ms
Check Range Int	✅	5ms
Check Range Float	✅	5ms
Button	✅	2ms

Tools Fileio

Test Name	Status	Duration
Add Extension	✅	1ms
Add Suffix	✅	1ms
Get Timestamp For Files	✅	1ms
Get Last File	✅	2ms
Extract Suffix	✅	1ms
Cleanup Process	✅	3ms
Load Dll	✅	2ms
Save Json	✅	1ms
Open Json	✅	1ms
Open Json Bad File	✅	1ms
Save Tif	✅	4ms
Save Tif 2D	✅	3ms
Save Tif Bad Stack	✅	1ms
Open Tif	✅	9ms
Open Tif Bad File	✅	1ms
Save Png	✅	7ms
Save Png Color	✅	11ms
Save Png Bad Sample	✅	1ms
Open Calibration Mat Bad File	✅	1ms
Open Calibration Mat	✅	4ms

Log Test : Get Timestamp For Files

Timestamp with hour : 20260504_135702
Timestamp without hour : 20260504

Log Test : Get Last File

D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\File-03.txt
D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\File-03.txt

Log Test : Load Dll

Unable to load the DLL 'PALMTracer_File.dll':
        Could not find module 'D:\a\palm-tracer\palm-tracer\palm_tracer\DLL\PALMTracer_File.dll' (or one of its dependencies). Try using the full path with constructor syntax.

Tools Filemigrator

Test Name	Status	Duration
Open	✅	4ms
Update Meta	✅	5ms
Open Old File	✅	6ms
Open Old Irregular File	✅	4ms
Column Migrator	✅	3ms
Analyze	✅	5ms
Migrate	✅	357ms

Log Test : Analyze

.

Tools Logger

Test Name	Status	Duration
Logger	✅	6ms
Logger Bad Use	✅	2ms
Logger With Use	✅	3ms

Tools Monitoring

Test Name	Status	Duration
Monitoring	✅	1.21s
Monitoring Save	✅	6.81s

Log Test : Monitoring

6 entrées.
Timestamps : [0.0, 0.2, 0.41, 0.61, 0.81, 1.0]
CPU Usage : [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
GPU Usage : [0, 0, 0, 0, 0, 0]
Memory Usage : [572.6796875, 572.6796875, 572.6796875, 572.6796875, 572.6796875, 572.66015625]
Disk Usage : [0, 0.0, 0.0, 0.0, 0.0, 0.0]

Log Test : Monitoring Save

Simulating high CPU usage for 2 seconds...
CPU simulation complete.
Allocating 50 MB of memory...
Memory allocated. Holding for 2 seconds...
Releasing memory.
Writing a file of size 1 MB...
File written. Holding for 2 seconds...
Deleting the file...
Disk I/O simulation complete.
Kaleido doesn't work so well need update. No Image Saved.

Tools Ui

Test Name	Status	Duration
Builders	✅	5ms
Builders Spin	✅	2ms
Sync Spin	✅	2ms
Sync Button Group	✅	2ms
Print Error	✅	1ms
Print Warning	✅	1ms
Print Success	✅	1ms
Format Time	✅	1ms

Log Test : Print Error

Message d'erreur

Log Test : Print Warning

Message d'avertissement

Log Test : Print Success

Message de succes

Ui Alignmentwidget

Test Name	Status	Duration
Widget Creation	✅	7ms
Bad Load Tif	✅	6ms
Bad Load Coef	✅	9ms
Bad Compute	✅	6ms
Compute	✅	7ms
Bad Align	✅	7ms
Align	✅	57ms

Ui Astigmatism3Dwidget

Test Name	Status	Duration
Widget Creation	✅	378ms
Bad Load Loc	✅	185ms
Bad Load Model	✅	164ms
Bad Compute	✅	164ms
Check Loc	✅	223ms
Compute	✅	440ms
Compute Mean Beads	✅	446ms
Compute Remove Bead Col	✅	415ms
Compute Remove Multi	✅	413ms
Compute Z	✅	442ms
Compute Center Z	✅	441ms
Compute Bad Model	✅	445ms
Bad Estimate	✅	165ms
Estimate	✅	247ms
Estimate Backup	✅	252ms
Sync Spin	✅	212ms
Download	✅	252ms

Log Test : Download

D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\ref

Ui Baseplotlywidget

Test Name	Status	Duration
Creation	✅	50ms
Update Plotly	✅	61ms
Update Plotly No Js	✅	64ms
Download Plotly	✅	59ms
Export Plotly	✅	60ms

Log Test : Download Plotly

D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\output
D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\output

Log Test : Export Plotly

No figures to export.

Ui Filemigratorwidget

Test Name	Status	Duration
Widget Creation	✅	7ms
Bad Load	✅	7ms
Mirgate	✅	40ms

Ui Graphviewer

Test Name	Status	Duration
Widget Creation	✅	242ms
Add Stack	✅	341ms
Actualize	✅	441ms
Reset Filtered	✅	323ms
Update Filtered	✅	385ms
Update Plot	✅	749ms
Dual Source	✅	486ms
Get Plot Data	✅	925ms
Tracks Source	✅	255ms

Log Test : Add Stack

No valid settings file to load.

Ui Viewerhrwidget

Test Name	Status	Duration
Widget Creation	✅	2.01s
Add Stack	✅	1.59s
Change Source	✅	1.61s
Actualize	✅	1.62s
Reset Filtered	✅	1.65s
Update Filtered	✅	1.66s
Save	✅	1.64s
Screenshot	✅	1.67s
Crop	✅	1.65s
Generate Bad	✅	1.67s
Generate	✅	1.75s
Generate Drift	✅	1.74s

Log Test : Save

INFO: Image file saved successfully.

Log Test : Screenshot

INFO: Screenshot saved successfully.

Log Test : Generate

[04-05-2026 13:57:38] Log opened : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer\log-20260504_135738.log
[04-05-2026 13:57:38] Start Processing.
[04-05-2026 13:57:38] Output folder: D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer
[04-05-2026 13:57:38] Meta file saved.
[04-05-2026 13:57:38] Settings saved.
[04-05-2026 13:57:38] Localization disabled.
[04-05-2026 13:57:38] Beads Extraction disabled.
[04-05-2026 13:57:38] Tracking disabled.
[04-05-2026 13:57:38] Blinking Reconnection disabled.
[04-05-2026 13:57:38] Tracks Compute disabled.
[04-05-2026 13:57:38] Gallery generation disabled.
[04-05-2026 13:57:38] Graphical visualization disabled.
[04-05-2026 13:57:38] High-resolution visualization disabled.
[04-05-2026 13:57:38] Processing complete.
[04-05-2026 13:57:38] Log closed : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer\log-20260504_135738.log
Loading setting file 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer\settings-20260504_135738.json'.
       Loading files from the 'D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer' folder with the timestamp 20260504_135738.
 File 'localizations' loaded successfully.
   File 'localizations_filtered' not found.
    File 'localizations_corrected' not found.
   File 'localizations_corrected_filtered' not found.
  File 'beads' loaded successfully.
   File 'tracking' loaded successfully.
        File 'tracking_filtered' not found.
 File 'tracking_reconnected' not found.
      File 'tracking_reconnected_filtered' not found.
     File 'tracking_MSD' not found.
      File 'tracking_MSD_filtered' not found.
     File 'tracking_InstantD' not found.
 File 'tracking_InstantD_filtered' not found.
        File 'tracking_Fit' not found.
      File 'tracking_Fit_filtered' not found.
     Stack loaded successfully (size: (10, 128, 256)).

Ui Widget

Test Name	Status	Duration
Widget Creation	✅	1.64s
Widget On Load Setting	✅	1.61s
Widget Reset Setting	✅	1.65s
Widget Reset Layer	✅	2.27s
Widget Get Actual Image	✅	1.92s
Widget Add Detection Layers	✅	5.09s
Widget Preview	✅	2.66s
Widget Roi Filter Layer	✅	2.24s
Widget Auto Threshold	✅	1.95s
Widget Thread Process	✅	2.08s
Widget Keyblocker	✅	2.00s
Viewer3D	✅	2.16s

Log Test : Widget Get Actual Image

INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.

Log Test : Widget Roi Filter Layer

INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.

Log Test : Widget Thread Process

INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.
[04-05-2026 13:58:03] Log opened : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer\log-20260504_135803.log
[04-05-2026 13:58:03] Start Processing.
[04-05-2026 13:58:03] Output folder: D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer
[04-05-2026 13:58:03] Meta file saved.
[04-05-2026 13:58:03] Settings saved.
[04-05-2026 13:58:03] Localization disabled.
[04-05-2026 13:58:03] Beads Extraction disabled.
[04-05-2026 13:58:03] Tracking disabled.
[04-05-2026 13:58:03] Blinking Reconnection disabled.
[04-05-2026 13:58:03] Tracks Compute disabled.
[04-05-2026 13:58:03] Gallery generation disabled.
[04-05-2026 13:58:03] Graphical visualization disabled.
[04-05-2026 13:58:03] High-resolution visualization disabled.
[04-05-2026 13:58:03] Processing complete.
[04-05-2026 13:58:03] Log closed : D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack_PALM_Tracer\log-20260504_135803.log
Auto Threshold: 63.95

Log Test : Widget Keyblocker

INFO: Loading the setting file 'C:\Users\runneradmin\.palm_tracer\settings.json'.
INFO: Loaded D:\a\palm-tracer\palm-tracer\palm_tracer\_tests\input\stack.tif into Napari viewer.

Log Test : Viewer3D

WARNING: The file must contain the columns X, Y, Z, and Integrated Intensity.