Test Report Ci Macos-Latest 3.12

Environnement

Python	3.12.10
Platform	macOS-15.7.4-arm64-arm-64bit
CI	true
System	Darwin
CPU	Apple M1 (Virtual) (Unknown frequency - 3 Cores (3 Logical))
RAM	7.00 GB
GPU	Error detecting GPU: NVML Shared Library Not Found

Summary

240 tests collected, 240 passed ✅, 0 failed ❌, 0 skipped ⏭️ in 0:01:10s on 03/04/2026 at 07:45:12

Monitoring

Test Cases

Palmtracer

Test Name	Status	Duration
Reset Result	✅	507ms
Getter Localization	✅	31ms
Getter Beads	✅	26ms
Getter Tracks	✅	26ms
Getter Tracks Compute	✅	23ms
Get Status	✅	24ms
Getter Path	✅	23ms
Getter Stack	✅	27ms
Getter Suffix	✅	36ms
Load Bad Dll	✅	25ms
Load Nothing	✅	27ms
Load	✅	183ms
Process No Input	✅	44ms
Process Nothing	✅	324ms
Process Bad Dll	✅	26ms
Process Multiple Stack	✅	97ms
Process Only Localization	✅	122ms
Process Only Localization Spline Bad	✅	45ms
Process Only Localization Spline	✅	87ms
Process Only Beads Extraction No Beads	✅	110ms
Process Plane Discontinuous	✅	31ms
Process Only Beads Extraction	✅	100ms
Process Only Tracking	✅	212ms
Process Only Tracking Blinking	✅	81ms
Process Only Tracks Compute	✅	143ms
Process Only Visualization Hr	✅	208ms
Process Only Visualization Graph	✅	2.74s
Process Only Gallery	✅	62ms
Process All	✅	3.00s
Reset Filtered	✅	42ms
Update Filtered	✅	68ms
Save Filtered	✅	57ms
Filter Plan	✅	55ms
Filter All Localization	✅	84ms
Filter All Tracking	✅	63ms
Filter All Tracks Compute	✅	128ms
Filter Outside	✅	33ms
Add Color	✅	44ms

Log Test : Update Filtered

[03-04-2026 07:44:10] Log opened : /Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack_PALM_Tracer/log-20260403_074410.log
[03-04-2026 07:44:10] Start Processing.
[03-04-2026 07:44:10] Output folder: /Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack_PALM_Tracer
[03-04-2026 07:44:10] Settings saved.
[03-04-2026 07:44:10] Meta file saved.
[03-04-2026 07:44:10] Localization disabled.
[03-04-2026 07:44:10]        Loading a pre-computed localization file.
[03-04-2026 07:44:10]      File '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack_PALM_Tracer/localizations-20260403_074410.csv' loaded successfully, 451 localization(s) found.
[03-04-2026 07:44:10] Beads Extraction disabled.
[03-04-2026 07:44:10]     No pre-computed beads extraction data.
[03-04-2026 07:44:10] Tracking disabled.
[03-04-2026 07:44:10]     No pre-computed tracking data.
[03-04-2026 07:44:10] Blinking Reconnection disabled.
[03-04-2026 07:44:10] Tracks Computes disabled.
[03-04-2026 07:44:10]     No pre-computed tracks computes data.
[03-04-2026 07:44:10]  No pre-computed tracks computes data.
[03-04-2026 07:44:10]  No pre-computed tracks computes data.
[03-04-2026 07:44:10] High-resolution visualization disabled.
[03-04-2026 07:44:10] Graphical visualization disabled.
[03-04-2026 07:44:10] Gallery generation disabled.
[03-04-2026 07:44:10] Processing complete.
[03-04-2026 07:44:10] Log closed : /Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack_PALM_Tracer/log-20260403_074410.log

Processing Astigmatism3D

Test Name	Status	Duration
Get Z From Planes	✅	1ms
Get Z From Step	✅	2ms
Remove Multi Loc	✅	9ms
Sigma Model	✅	1ms
Model Validity	✅	2ms
Model Projection Validity	✅	11ms

Log Test : Remove Multi Loc

Not all valid columns in localizations. Unable to remove ambiguous localizations reliably.
All planes contain multiple localizations. Unable to remove ambiguous localizations reliably.

Processing Drift

Test Name	Status	Duration
Extract Bead Bad Input	✅	5ms
Extract Beads No Match Returns Empty	✅	4ms
Assign Tracks No Pairs	✅	1ms
Assign Tracks Skip Used Track	✅	1ms
Extract Beads	✅	37ms
Remove Beads	✅	12ms
Get Drift Bad Input	✅	3ms
Get Drift	✅	20ms
Apply Drift Bad Input	✅	2ms
Apply Drift	✅	14ms
Chain Drift	✅	19ms
Drift Correction	✅	25ms

Processing Gallery

Test Name	Status	Duration
Make Gallery	✅	16ms

Processing Grapher

Test Name	Status	Duration
Blank	✅	392ms
Histogram	✅	427ms
Scatter	✅	420ms
Cloud	✅	516ms
Astigmatism3D Curve	✅	118ms

Processing Palm

Test Name	Status	Duration
Palm Dll Valid	✅	4ms
Palm Cpu Empty Result	✅	5ms
Palm Cpu Image	✅	669ms
Palm Cpu Stack	✅	3.16s
Palm Cpu Stack Plane Selection	✅	155ms
Palm Cpu Stack Dll Check Quadrant	✅	201ms
Cpu Auto Threshold	✅	42ms
Tracking	✅	4.96s
Blinking Reconnection	✅	163ms
Tracks Compute	✅	45ms
Align	✅	161ms
Wavelett	✅	85ms
Astigmatism 3D Calibration	✅	10ms
Astigmatism 3D Estimation	✅	3ms

Log Test : Palm Cpu Image

Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-0_103.6_True_0_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-0_103.6_True_1_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-0_103.6_True_2_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-0_103.6_True_3_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-0_103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 51 Points comparés, 51 Points identiques (100.00%)

Log Test : Palm Cpu Stack

Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_True_0_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_True_1_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_True_2_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_True_3_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 451 Points comparés, 451 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_False_0_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_False_1_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_False_2_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_False_3_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_False_4_1.0_0.0_7.csv'
Comparaison terminée : 429 Points comparés, 429 Points identiques (100.00%)

Log Test : Palm Cpu Stack Plane Selection

Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-plane_select-103.6_True_4_1.0_0.0_7.csv'
Comparaison terminée : 227 Points comparés, 227 Points identiques (100.00%)

Log Test : Palm Cpu Stack Dll Check Quadrant

Comparaison terminée : 269 Points comparés, 269 Points identiques (100.00%)

Log Test : Tracking

Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-tracking-103.6_True_0_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 224 Points comparés, 224 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-tracking-103.6_True_1_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 223 Points comparés, 223 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-tracking-103.6_True_2_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 225 Points comparés, 225 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-tracking-103.6_True_3_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 222 Points comparés, 222 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-tracking-103.6_True_4_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 222 Points comparés, 222 Points identiques (100.00%)
Fichier de localisations '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_True_5_1.0_0.0_7.csv' indisponible.
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-tracking-103.6_False_0_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 214 Points comparés, 214 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-tracking-103.6_False_1_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 212 Points comparés, 212 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-tracking-103.6_False_2_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 217 Points comparés, 217 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-tracking-103.6_False_3_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 211 Points comparés, 211 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-tracking-103.6_False_4_1.0_0.0_7-5_2_10_0.5.csv'
Comparaison terminée : 214 Points comparés, 214 Points identiques (100.00%)
Fichier de localisations '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/stack-localizations-103.6_False_5_1.0_0.0_7.csv' indisponible.

Log Test : Blinking Reconnection

Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/tracking-blinking-0.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/tracking-blinking-1.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/tracking-blinking-2.csv'
Comparaison terminée : 18 Points comparés, 18 Points identiques (100.00%)

Log Test : Tracks Compute

Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/tracking2-MSD-True.csv'
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/tracking2-Fit-True.csv'
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/tracking2-MSD-False.csv'
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/tracking2-Fit-False.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/tracking2-Fit-1.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/tracking2-Fit-2.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Comparaison avec : '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref/tracking2-Fit-3.csv'
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering
Problem with trajectory identifiers, be careful with filtering

Processing Parsing

Test Name	Status	Duration
Get Meta	✅	2ms
Rearrange Dataframe Columns	✅	4ms
Log10 Dataframe	✅	3ms
Parse Irregular Array	✅	2ms
Parse Result	✅	11ms
Parse Localization For Tracking	✅	7ms

Processing Renderer

Test Name	Status	Duration
Set Size	✅	1ms
Get Localization Colors	✅	4ms
Get Tracks Colors	✅	20ms
Draw Line	✅	1ms
Localizations	✅	1ms
Tracks	✅	1ms

Processing Visualization

Test Name	Status	Duration
Normalize Data	✅	2ms
Render Hr Image	✅	14ms
Render Hr Image Bad Input	✅	2ms
Render Tracks Image	✅	15ms
Render Tracks Image Bad Input	✅	5ms
Render Roi	✅	25ms
Render Roi Bad Input	✅	2ms
Plot Histogram	✅	713ms
Plot Histogram Bad Input	✅	92ms
Plot Violin	✅	369ms
Plot Violin Bad Input	✅	39ms
Plot Heatmap	✅	238ms
Plot Heatmap Bad Input	✅	40ms

Settings Groups

Test Name	Status	Duration
Base Group	✅	4ms
Batch	✅	48ms
Batch Get Path	✅	3ms
Batch Get Stacks	✅	15ms
Calibration	✅	5ms
Localization	✅	21ms
Gaussian Fit	✅	4ms
Spline Fit	✅	4ms
Beads	✅	3ms
Tracking	✅	12ms
Tracks Blinking Reconnection	✅	4ms
Tracks Computes	✅	8ms
Gallery	✅	5ms
Visualization Hr	✅	22ms
Visualization Graph	✅	8ms
Filtering	✅	39ms
Filtering L	✅	21ms
Filtering T	✅	12ms

Log Test : Batch

- Activate : True
- Files : -1
- Mode : 0

{'Files': -1, 'Mode': 0}

Log Test : Batch Get Stacks

Error when concatenating stacks (they will be processed independently):
ValueError: all the input array dimensions except for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 128 and the array at index 1 has size 256

Log Test : Calibration

- Activate : True
- Pixel Size : 0.32
- Exposure : 0.05
- Intensity : 0.012

{'Pixel Size': 0.32, 'Exposure': 0.05, 'Intensity': 0.012}

Log Test : Localization

- Activate : True
- Preview : True
- Threshold : 90.0
- Auto Threshold : True
- ROI Shape : 0
- ROI Size : 7
- Watershed : True
- Fit : 0
- Gaussian Fit :
  - Activate : True
  - Mode : 0
  - Sigma : 1.0
  - Theta : 0.0
- Spline Fit :
  - Activate : True
  - Sensor : 0
  - Variance Map : 
  - File : 

{'Preview': True, 'Threshold': 90.0, 'Auto Threshold': True, 'ROI Shape': 0, 'ROI Size': 7, 'Watershed': True, 'Fit': 0, 'Gaussian Fit Mode': 0, 'Gaussian Fit Sigma': 1.0, 'Gaussian Fit Theta': 0.0, 'Spline Fit Sensor': 0, 'Spline Fit Variance Map': '', 'Spline Fit File': ''}

Log Test : Gaussian Fit

- Activate : True
- Mode : 2
- Sigma : 1.0
- Theta : 0.0

{'Mode': 2, 'Sigma': 1.0, 'Theta': 0.0}

Log Test : Spline Fit

- Activate : True
- Sensor : 1
- Variance Map : 
- File : 

{'Sensor': 1, 'Variance Map': '', 'File': ''}

Log Test : Beads

- Activate : True
- Max Distance : 2.0
- 3D : False

{'Max Distance': 2.0, '3D': False}

Log Test : Tracking

- Activate : True
- Max Distance : 2.0

{'Max Distance': 2.0}

Log Test : Tracks Blinking Reconnection

- Activate : True
- Mode : 1
- Max Duration : 1
- Max Distance : 1.0

{'Mode': 1, 'Max Duration': 1, 'Max Distance': 1.0}

Log Test : Tracks Computes

- Activate : True
- MSD : True
- Instant Diffusion : False
- Fit Length : 4
- 3D : False
- Log Scale : False
- Fit : 0

{'MSD': True, 'Instant Diffusion': False, 'Fit Length': 4, '3D': False, 'Log Scale': False, 'Fit': 0}

Log Test : Gallery

- Activate : True
- ROI Size : 11
- ROIs Per Line : 30

{'ROI Size': 11, 'ROIs Per Line': 30}

Log Test : Visualization Hr

- Activate : True
- Ratio : 1
- Type : 0
- Source L : 1
- Source T : 1

{'Ratio': 1, 'Type': 0, 'Source L': 1, 'Source T': 1}

Log Test : Visualization Graph

- Activate : True
- Mode : 1
- Source : 0

{'Mode': 1, 'Source': 0}

Log Test : Filtering

FilteringL id: 4789083968
X id: 4787982256
limits id 4786908800
- Activate : True
- Save : True
- Plane : [1, 100000]
- Localization :
  - Activate : True
  - X : [0, 100000]
  - Y : [0, 100000]
  - Z : [-1000, 1000]
  - Intensity : [0, 10000000]
  - Sigma X : [0.0, 10.0]
  - Sigma Y : [0.0, 10.0]
  - Circularity : [0.0, 1.0]
  - Theta : [-180.0, 180.0]
  - MSE XY : [0.0, 1.0]
  - MSE Z : [0.0, 1.0]
- Tracks :
  - Activate : True
  - Length : [1, 10000]
  - Instant D : [-5.0, 5.0]
  - D Coeff : [-5.0, 5.0]
  - Alpha : [-10.0, 10.0]
  - Speed : [0.0, 1.0]
  - Confinement : [-10.0, 10.0]

{'Save': True, 'Plane': [1, 100000], 'Localization X': [0, 100000], 'Localization Y': [0, 100000], 'Localization Z': [-1000, 1000], 'Localization Intensity': [0, 10000000], 'Localization Sigma X': [0.0, 10.0], 'Localization Sigma Y': [0.0, 10.0], 'Localization Circularity': [0.0, 1.0], 'Localization Theta': [-180.0, 180.0], 'Localization MSE XY': [0.0, 1.0], 'Localization MSE Z': [0.0, 1.0], 'Tracks Length': [1, 10000], 'Tracks Instant D': [-5.0, 5.0], 'Tracks D Coeff': [-5.0, 5.0], 'Tracks Alpha': [-10.0, 10.0], 'Tracks Speed': [0.0, 1.0], 'Tracks Confinement': [-10.0, 10.0]}

Log Test : Filtering L

FilteringL id: 5205154160
X id: 5205152960
limits id 5377600704
- Activate : True
- X : [2, 9]
- Y : [0, 100000]
- Z : [-1000, 1000]
- Intensity : [0, 10000000]
- Sigma X : [0.0, 10.0]
- Sigma Y : [0.0, 10.0]
- Circularity : [0.0, 1.0]
- Theta : [-180.0, 180.0]
- MSE XY : [0.0, 1.0]
- MSE Z : [0.0, 1.0]

{'X': [2, 9], 'Y': [0, 100000], 'Z': [-1000, 1000], 'Intensity': [0, 10000000], 'Sigma X': [0.0, 10.0], 'Sigma Y': [0.0, 10.0], 'Circularity': [0.0, 1.0], 'Theta': [-180.0, 180.0], 'MSE XY': [0.0, 1.0], 'MSE Z': [0.0, 1.0]}

Log Test : Filtering T

- Activate : True
- Length : [2, 3]
- Instant D : [-5.0, 5.0]
- D Coeff : [-5.0, 5.0]
- Alpha : [-10.0, 10.0]
- Speed : [0.0, 1.0]
- Confinement : [-10.0, 10.0]

{'Length': [2, 3], 'Instant D': [-5.0, 5.0], 'D Coeff': [-5.0, 5.0], 'Alpha': [-10.0, 10.0], 'Speed': [0.0, 1.0], 'Confinement': [-10.0, 10.0]}

Settings Settings

Test Name	Status	Duration
Settings	✅	50ms
Settings Group Getter	✅	27ms
Settings Signal	✅	47ms

Settings Signal

Test Name	Status	Duration
Connect And Emit Direct	✅	1ms
Disconnect	✅	1ms
Block Simple Coalescence Last Value	✅	1ms
Block Without Emits No Output	✅	1ms
Nested Blocks Emit Once At Outer Exit	✅	1ms
Emit Default None Coalesced	✅	1ms
Block Flags Reset After Flush	✅	1ms
Blocked Returns Context Manager Instance	✅	1ms
Internal Block Begin End Paths	✅	1ms
Coalescence Overwrite Multiple Times	✅	1ms
Emit Direct After Previous Block	✅	1ms

Settings Types

Test Name	Status	Duration
Base Setting	✅	1ms
Create Setting From Dict	✅	3ms
Create Setting From Dict Fail	✅	1ms
Spin Int	✅	17ms
Spin Float	✅	2ms
Check Box	✅	2ms
Combo	✅	2ms
Browse File	✅	7ms
File List	✅	4ms
Check Range Int	✅	7ms
Check Range Float	✅	3ms
Button	✅	2ms

Tools Fileio

Test Name	Status	Duration
Add Extension	✅	2ms
Add Suffix	✅	2ms
Get Timestamp For Files	✅	1ms
Get Last File	✅	1ms
Extract Suffix	✅	2ms
Load Dll	✅	6ms
Save Json	✅	6ms
Open Json	✅	3ms
Open Json Bad File	✅	2ms
Save Tif	✅	17ms
Save Tif 2D	✅	15ms
Save Tif Bad Stack	✅	1ms
Open Tif	✅	11ms
Open Tif Bad File	✅	2ms
Save Png	✅	5ms
Save Png Color	✅	8ms
Save Png Bad Sample	✅	1ms
Open Calibration Mat Bad File	✅	2ms
Open Calibration Mat	✅	2ms

Log Test : Get Timestamp For Files

Timestamp with hour : 20260403_074425
Timestamp without hour : 20260403

Log Test : Get Last File

/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/File-03.txt
/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/File-03.txt

Log Test : Load Dll

Unable to load the DLL 'PALMTracer_File.dylib':
      dlopen(/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/DLL/PALMTracer_File.dylib, 0x0006): tried: '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/DLL/PALMTracer_File.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/DLL/PALMTracer_File.dylib' (no such file), '/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/DLL/PALMTracer_File.dylib' (no such file)

Tools Filemigrator

Test Name	Status	Duration
Open	✅	2ms
Update Meta	✅	3ms
Open Old File	✅	6ms
Open Old Irregular File	✅	4ms
Column Migrator	✅	3ms
Analyze	✅	3ms
Migrate	✅	191ms

Log Test : Analyze

.

Tools Logger

Test Name	Status	Duration
Logger	✅	12ms
Logger Bad Use	✅	4ms
Logger With Use	✅	3ms

Tools Monitoring

Test Name	Status	Duration
Monitoring	✅	1.47s
Monitoring Save	✅	6.87s

Log Test : Monitoring

4 entrées.
Timestamps : [0.0, 0.42, 0.9, 1.06]
CPU Usage : [0.5666666666666667, 0.5666666666666667, 1.2, 0.06666666666666667]
GPU Usage : [0, 0, 0, 0]
Memory Usage : [703.75, 703.75, 703.75, 703.734375]
Disk Usage : [0, 0.0, 0.0, 0.0]

Log Test : Monitoring Save

Simulating high CPU usage for 2 seconds...
CPU simulation complete.
Allocating 50 MB of memory...
Memory allocated. Holding for 2 seconds...
Releasing memory.
Writing a file of size 1 MB...
File written. Holding for 2 seconds...
Deleting the file...
Disk I/O simulation complete.
Kaleido doesn't work so well need update. No Image Saved.

Tools Ui

Test Name	Status	Duration
Builders	✅	5ms
Builders Spin	✅	3ms
Print Error	✅	1ms
Print Warning	✅	1ms
Print Success	✅	1ms
Format Time	✅	1ms

Log Test : Print Error

Message d'erreur

Log Test : Print Warning

Message d'avertissement

Log Test : Print Success

Message de succes

Ui Alignmentwidget

Test Name	Status	Duration
Widget Creation	✅	20ms
Bad Load Tif	✅	9ms
Bad Load Coef	✅	18ms
Bad Compute	✅	5ms
Compute	✅	7ms
Bad Align	✅	8ms
Align	✅	71ms

Ui Astigmatism3Dwidget

Test Name	Status	Duration
Widget Creation	✅	1.22s
Bad Load Loc	✅	121ms
Bad Load Model	✅	145ms
Bad Compute	✅	107ms
Compute	✅	298ms
Compute Remove Multi	✅	286ms
Compute Z	✅	236ms
Compute Center Z	✅	282ms
Bad Estimate	✅	131ms
Estimate	✅	182ms
Estimate Backup	✅	219ms
Sync Spin	✅	177ms
Download	✅	175ms

Log Test : Download

/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/ref

Ui Baseplotlywidget

Test Name	Status	Duration
Creation	✅	28ms
Update Plotly	✅	34ms
Update Plotly No Js	✅	37ms
Download Plotly	✅	32ms
Export Plotly	✅	38ms

Log Test : Download Plotly

/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/output
/Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/output

Log Test : Export Plotly

No figures to export.

Ui Filemigratorwidget

Test Name	Status	Duration
Widget Creation	✅	5ms
Bad Load	✅	12ms
Mirgate	✅	28ms

Ui Graphviewer

Test Name	Status	Duration
Widget Creation	✅	181ms
Add Stack	✅	352ms
Actualize	✅	519ms
Reset Filtered	✅	361ms
Update Filtered	✅	396ms
Update Plot	✅	731ms
Dual Source	✅	459ms
Get Plot Data	✅	955ms
Tracks Source	✅	259ms

Log Test : Add Stack

No valid settings file to load.

Ui Viewerhrwidget

Test Name	Status	Duration
Widget Creation	✅	1.84s
Add Stack	✅	821ms
Change Source	✅	795ms
Actualize	✅	805ms
Reset Filtered	✅	788ms
Update Filtered	✅	759ms
Save	✅	789ms
Generate	✅	776ms
Generate Drift	✅	1.17s

Log Test : Save

INFO: Image file saved successfully.

Ui Widget

Test Name	Status	Duration
Widget Creation	✅	1.11s
Widget On Load Setting	✅	1.14s
Widget Reset Setting	✅	1.18s
Widget Reset Layer	✅	1.49s
Widget Get Actual Image	✅	1.26s
Widget Add Detection Layers	✅	3.84s
Widget Preview	✅	1.62s
Widget Roi Filter Layer	✅	1.80s
Widget Auto Threshold	✅	1.77s
Widget Thread Process	✅	1.47s
Widget Keyblocker	✅	1.46s
Viewer3D	✅	1.56s

Log Test : Widget Get Actual Image

INFO: Loaded /Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack.tif into Napari viewer.

Log Test : Widget Roi Filter Layer

INFO: Loaded /Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack.tif into Napari viewer.

Log Test : Widget Thread Process

INFO: Loaded /Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack.tif into Napari viewer.
INFO: Thread Process done.
[03-04-2026 07:45:07] Log opened : /Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack_PALM_Tracer/log-20260403_074507.log
[03-04-2026 07:45:07] Start Processing.
[03-04-2026 07:45:07] Output folder: /Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack_PALM_Tracer
[03-04-2026 07:45:07] Settings saved.
[03-04-2026 07:45:07] Meta file saved.
[03-04-2026 07:45:07] Localization disabled.
[03-04-2026 07:45:07]        No pre-computed localization data.
[03-04-2026 07:45:07] Beads Extraction disabled.
[03-04-2026 07:45:07]         No pre-computed beads extraction data.
[03-04-2026 07:45:07] Tracking disabled.
[03-04-2026 07:45:07]     No pre-computed tracking data.
[03-04-2026 07:45:07] Blinking Reconnection disabled.
[03-04-2026 07:45:07] Tracks Computes disabled.
[03-04-2026 07:45:07]     No pre-computed tracks computes data.
[03-04-2026 07:45:07]  No pre-computed tracks computes data.
[03-04-2026 07:45:07]  No pre-computed tracks computes data.
[03-04-2026 07:45:07] High-resolution visualization disabled.
[03-04-2026 07:45:07] Graphical visualization disabled.
[03-04-2026 07:45:07] Gallery generation disabled.
[03-04-2026 07:45:07] Processing complete.
[03-04-2026 07:45:07] Log closed : /Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack_PALM_Tracer/log-20260403_074507.log
INFO: Thread Process done.
Auto Threshold: 63.95
INFO: Thread Process done.

Log Test : Widget Keyblocker

INFO: Loading the setting file '/Users/runner/.palm_tracer/settings.json'.
INFO: Loaded /Users/runner/work/palm-tracer/palm-tracer/palm_tracer/_tests/input/stack.tif into Napari viewer.

Log Test : Viewer3D

WARNING: The file must contain the columns X, Y, Z, and Integrated Intensity.